dpkg-buildpackage -us -uc -ui dpkg-buildpackage: info: source package coot dpkg-buildpackage: info: source version 1.1.07.705.gb7e2c16a2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/var/www/debian/coot/coot' dh_auto_clean dh_auto_clean --buildsystem cmake make[1]: Leaving directory '/var/www/debian/coot/coot' dh_clean dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building coot using existing ./coot_1.1.07.705.gb7e2c16a2+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: warning: ignoring deletion of file ccp4mg-utils/pygl/qt-text.cc.orig, use --include-removal to override dpkg-source: info: building coot in coot_1.1.07.705.gb7e2c16a2+dfsg-1.debian.tar.xz dpkg-source: info: building coot in coot_1.1.07.705.gb7e2c16a2+dfsg-1.dsc debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'macros'. libtoolize: copying file 'macros/libtool.m4' libtoolize: copying file 'macros/ltoptions.m4' libtoolize: copying file 'macros/ltsugar.m4' libtoolize: copying file 'macros/ltversion.m4' libtoolize: copying file 'macros/lt~obsolete.m4' configure.ac:41: installing './compile' configure.ac:31: installing './missing' MoleculesToTriangles/CXXClasses/Makefile.am: installing './depcomp' api/Makefile.am:113: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/var/www/debian/coot/coot' dh_auto_configure -- --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL checking what warning flags to pass to the C compiler... -Wall -Wunused checking what language compliance flags to pass to the C compiler... checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused checking what language compliance flags to pass to the C++ compiler... checking for sys/stdtypes.h... no checking for OpenMP flag of C compiler... -fopenmp checking whether g++ supports C++11 features by default... yes checking for std::thread in thread... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking if this is MINGW on Windows... no checking if this is msys2 windows 64... no checking for libpng >= 1.2... yes checking for cairo >= 1.14... yes checking for SQLite3... yes checking for mmdb2... yes checking for ssm... yes checking for non-prefixed single-precision FFTW2 (fftw.h)... no yes checking for Clipper... yes checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.3... yes checking for glm >= 0.9.9... yes checking for gtk4 >= 4.4... yes checking for epoxy >= 1.5... yes checking for a Python interpreter with version >= 3.7... python3 checking for python3... /usr/bin/python3 checking for python3 version... 3.11 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3/dist-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3/dist-packages checking for python3.11... (cached) /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the sysconfig Python package... yes checking for Python include path... -I/usr/include/python3.11 checking for Python library path... -L/usr/lib/aarch64-linux-gnu -lpython3.11 checking for Python site-packages path... /usr/lib/python3.11/site-packages checking for Python platform specific site-packages path... /usr/lib/python3.11/site-packages checking python extra libraries... -ldl -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking python3 module: requests... yes checking for pygobject-3.0 >= 3.36... yes checking for boostlib >= (102000)... yes checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes checking whether the Boost::Python library is available... yes checking whether boost_python is the correct library... no checking whether boost_python311 is the correct library... yes checking for RDKit in /usr OK, good we found RDKit in /usr ENHANCED_LIGAND_TOOLS_CPPFLAGS -DMAKE_ENHANCED_LIGAND_TOOLS checking for GEMMI... yes checking build type... Linux-aarch64-debian-sid-gtk4 checking for sound... no Not using MySQL database checking for curl >= 7.9.7... 8.7.1 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating doc/Makefile config.status: creating validation-graphs/Makefile config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating data/rama-coeffs/Makefile config.status: creating data/metal/Makefile config.status: creating data/cho-models/Makefile config.status: creating data/cho-acedrg/Makefile config.status: creating glTF/Makefile config.status: creating pixmaps/Makefile config.status: creating pixmaps/icons/Makefile config.status: creating textures/Makefile config.status: creating sounds/Makefile config.status: creating rama-data/Makefile config.status: creating man/Makefile config.status: creating api/Makefile config.status: creating pli/Makefile config.status: creating pyrogen/Makefile config.status: creating pyrogen/pyrogen config.status: creating layla/Makefile config.status: creating MoleculesToTriangles/Makefile config.status: creating MoleculesToTriangles/CXXSurface/Makefile config.status: creating MoleculesToTriangles/CXXSurface/MoleculesToTrianglesCXXSurface.pc config.status: creating MoleculesToTriangles/CXXClasses/Makefile config.status: creating MoleculesToTriangles/CXXClasses/MoleculesToTrianglesCXXClasses.pc config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating ui/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --buildsystem cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Looking for mmdb2/mmdb_defs.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libmmdb2.so -- Looking for ssm/ssm_vxedge.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libssm.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-mmdb.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-contrib.so -- Looking for clipper/clipper-minimol.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-minimol.so -- Looking for clipper/clipper-cif.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-cif.so -- CCP4 include directory: /usr/include -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libopenblas.so -- Found GSL: /usr/include (found version "2.7.1") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.43") -- Found gemmi version 0.6.4 -- Found Python: /usr/bin/python3 (found version "3.11.8") found components: Interpreter -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams system python regex thread serialization -- Found Python: /usr/bin/python3 (found suitable version "3.11.8", minimum required is "3.10") found components: Interpreter Development.Module Development.SABIModule -- Note: MAKE_ENHANCED_LIGAND_TOOLS was not enabled -- Configuring done (2.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /var/www/debian/coot/coot/obj-aarch64-linux-gnu make[1]: Leaving directory '/var/www/debian/coot/coot' debian/rules override_dh_auto_build make[1]: Entering directory '/var/www/debian/coot/coot' dh_auto_build make -j8 make[2]: Entering directory '/var/www/debian/coot/coot' Making all in auxil make[3]: Entering directory '/var/www/debian/coot/coot/auxil' Making all in catcheck make[4]: Entering directory '/var/www/debian/coot/coot/auxil/catcheck' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/catcheck' Making all in rama make[4]: Entering directory '/var/www/debian/coot/coot/auxil/rama' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/rama' Making all in sec-str make[4]: Entering directory '/var/www/debian/coot/coot/auxil/sec-str' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/sec-str' Making all in strand-analysis make[4]: Entering directory '/var/www/debian/coot/coot/auxil/strand-analysis' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/strand-analysis' Making all in vectors make[4]: Entering directory '/var/www/debian/coot/coot/auxil/vectors' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/vectors' make[4]: Entering directory '/var/www/debian/coot/coot/auxil' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/var/www/debian/coot/coot/auxil' make[3]: Leaving directory '/var/www/debian/coot/coot/auxil' Making all in scheme make[3]: Entering directory '/var/www/debian/coot/coot/scheme' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/scheme' Making all in python make[3]: Entering directory '/var/www/debian/coot/coot/python' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/python' Making all in pdb-templates make[3]: Entering directory '/var/www/debian/coot/coot/pdb-templates' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/pdb-templates' Making all in macros make[3]: Entering directory '/var/www/debian/coot/coot/macros' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/macros' Making all in compat make[3]: Entering directory '/var/www/debian/coot/coot/compat' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt.lo getopt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt1.lo getopt1.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt1.cc -fPIC -DPIC -o .libs/getopt1.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt.cc -fPIC -DPIC -o .libs/getopt.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/aarch64-linux-gnu getopt.lo getopt1.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/getopt.o .libs/getopt1.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-compat.so.0 -o .libs/libcoot-compat.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-compat.so.0" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-compat.so" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so") libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/compat' Making all in utils make[3]: Entering directory '/var/www/debian/coot/coot/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. 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"-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" 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-DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o In file included from atomic-numbers.cc:22: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from setup-syminfo.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-fasta.cc:25: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o threads.lo threads.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o align-utils.lo align-utils.cc In file included from gdk-keysyms.cc:23: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c threads.cc -fPIC -DPIC -o .libs/threads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c align-utils.cc -fPIC -DPIC -o .libs/align-utils.o In file included from hsv-rgb.cc:29: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pir-alignment.lo pir-alignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pir-alignment.cc -fPIC -DPIC -o .libs/pir-alignment.o In file included from coot-utils.cc:59: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o split-indices.lo split-indices.cc In file included from threads.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o radix.lo radix.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o logging.lo logging.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c split-indices.cc -fPIC -DPIC -o .libs/split-indices.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c radix.cc -fPIC -DPIC -o .libs/radix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c logging.cc -fPIC -DPIC -o .libs/logging.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o insertion-sort.lo insertion-sort.cc In file included from pir-alignment.cc:28: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o colour-holder.lo colour-holder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c insertion-sort.cc -fPIC -DPIC -o .libs/insertion-sort.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-holder.cc -fPIC -DPIC -o .libs/colour-holder.o /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/setup-syminfo.o .libs/gdk-keysyms.o .libs/hsv-rgb.o .libs/dodec.o .libs/win-compat.o .libs/threads.o .libs/align-utils.o .libs/pir-alignment.o .libs/split-indices.o .libs/radix.o .libs/logging.o .libs/insertion-sort.o .libs/colour-holder.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-utils.so.0" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-utils.so" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/utils' Making all in protein_db make[3]: Entering directory '/var/www/debian/coot/coot/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db_utils.lo protein_db_utils.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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"-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/aarch64-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib 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-DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o In file included from mini-mol.hh:29, from mini-mol.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mini-mol.hh:29, from mini-mol-utils.hh:22, from mini-mol-utils.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so.0" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so") libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/mini-mol' Making all in geometry make[3]: Entering directory '/var/www/debian/coot/coot/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE 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-I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse.cc -fPIC -DPIC -o .libs/cif-parse.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils.cc -fPIC -DPIC -o .libs/mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sbase.cc -fPIC -DPIC -o .libs/read-sbase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link.cc -fPIC -DPIC -o .libs/link.o In file included from energy-lib.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-tools.lo glyco-tools.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-tools.cc -fPIC -DPIC -o .libs/glyco-tools.o In file included from dictionary-residue.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from link.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-sbase.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glyco-tools.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from protein-geometry.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dict-utils.lo dict-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dict-utils.cc -fPIC -DPIC -o .libs/dict-utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chem_mods.lo chem_mods.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chem_mods.cc -fPIC -DPIC -o .libs/chem_mods.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o srs-interface.lo srs-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c srs-interface.cc -fPIC -DPIC -o .libs/srs-interface.o In file included from srs-interface.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-donor-acceptors.lo protein-donor-acceptors.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-graph.lo lbg-graph.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o In file included from dict-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from chem_mods.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dreiding.lo dreiding.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dreiding.cc -fPIC -DPIC -o .libs/dreiding.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main-chain.lo main-chain.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c main-chain.cc -fPIC -DPIC -o .libs/main-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-and-atom-specs.cc -fPIC -DPIC -o .libs/residue-and-atom-specs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o intercept-3GP.lo intercept-3GP.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c intercept-3GP.cc -fPIC -DPIC -o .libs/intercept-3GP.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mol-utils-2.lo mol-utils-2.cc In file included from residue-and-atom-specs.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils-2.cc -fPIC -DPIC -o .libs/mol-utils-2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hydrophobic.lo hydrophobic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cif-parse-mon-lib.lo cif-parse-mon-lib.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-link.cc -fPIC -DPIC -o .libs/cif-parse-link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-mon-lib.cc -fPIC -DPIC -o .libs/cif-parse-mon-lib.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-metals-json.lo read-metals-json.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-metals-json.cc -fPIC -DPIC -o .libs/read-metals-json.o In file included from cif-parse-mon-lib.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse-link.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-metals-json.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/compat/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so") libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/geometry' Making all in lidia-core make[3]: Entering directory '/var/www/debian/coot/coot/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rdkit-interface.lo rdkit-interface.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-types.lo atom-types.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bond-record-container-t.lo bond-record-container-t.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cod-atom-type-t.lo cod-atom-type-t.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-shared.cc -fPIC -DPIC -o .libs/lbg-shared.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-type-t.cc -fPIC -DPIC -o .libs/cod-atom-type-t.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-molfile.cc -fPIC -DPIC -o .libs/lbg-molfile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rdkit-interface.cc -fPIC -DPIC -o .libs/rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lig-build.cc -fPIC -DPIC -o .libs/lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-types.cc -fPIC -DPIC -o .libs/cod-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-types.cc -fPIC -DPIC -o .libs/atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-record-container-t.cc -fPIC -DPIC -o .libs/bond-record-container-t.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cod-atom-types.lo cod-atom-types.cc In file included from lig-build.cc:25: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-types.cc -fPIC -DPIC -o .libs/cod-atom-types.o In file included from lbg-molfile.hh:32, from lbg-molfile.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bond-table-record-t.lo bond-table-record-t.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-table-record-t.cc -fPIC -DPIC -o .libs/bond-table-record-t.o In file included from cod-types.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from atom-types.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rdkit-interface.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chemical-feature-clusters.lo chemical-feature-clusters.cc In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-types.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-types.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-atom-types.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chemical-feature-clusters.cc -fPIC -DPIC -o .libs/chemical-feature-clusters.o In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-type-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-atom-type-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o svg-molecule.lo svg-molecule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o In file included from chemical-feature-clusters.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from bond-record-container-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from atom-types.cc:30: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from rdkit-interface.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from bond-record-container-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from svg-molecule.hh:31, from svg-molecule.cc:29: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from chemical-feature-clusters.cc:33: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so.0" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so") libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/lidia-core' Making all in coot-utils make[3]: Entering directory '/var/www/debian/coot/coot/coot-utils' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" 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.libs/pepflip-using-difference-map.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-stats.cc -fPIC -DPIC -o .libs/xmap-stats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trim.cc -fPIC -DPIC -o .libs/trim.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-utils.cc -fPIC -DPIC -o .libs/coot-map-utils.o In file included from mmrrcc.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-map-utils.hh:33, from trim.cc:21: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o exp-fit.lo exp-fit.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blob-line.lo blob-line.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o In file included from pepflip-using-difference-map.cc:28: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blob-line.cc -fPIC -DPIC -o .libs/blob-line.o In file included from maps-spherical.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o slurp-map.lo slurp-map.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-water-baddies.lo find-water-baddies.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c find-water-baddies.cc -fPIC -DPIC -o .libs/find-water-baddies.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c slurp-map.cc -fPIC -DPIC -o .libs/slurp-map.o In file included from coot-map-utils.hh:33, from blob-line.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-map-utils.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o diff-diff-map-peaks.lo diff-diff-map-peaks.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils.lo coot-coord-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c diff-diff-map-peaks.cc -fPIC -DPIC -o .libs/diff-diff-map-peaks.o coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:892:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 892 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o In file included from coot-map-utils.cc:3761: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from coot-map-utils.hh:33, from find-water-baddies.cc:29: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-nucleotides.cc -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot-map-utils.cc:601:39: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/algorithm:60, from coot-map-utils.cc:23: /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4335:45: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': coot-map-utils.cc:4420:87: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4575:69: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-rama.lo coot-rama.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o In file included from coot-coord-utils.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-rama.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-coord-utils-nucleotides.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:892:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 892 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-h-bonds.lo coot-h-bonds.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hole.lo hole.cc coot-map-utils.cc: In lambda function: coot-map-utils.cc:4575:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4575 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-h-bonds.cc -fPIC -DPIC -o .libs/coot-h-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hole.cc -fPIC -DPIC -o .libs/hole.o In file included from slurp-map.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sm-cif.lo read-sm-cif.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sm-cif.cc -fPIC -DPIC -o .libs/read-sm-cif.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4420:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4420 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coot-map-utils.cc: In lambda function: coot-map-utils.cc:4575:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4575 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from hole.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-sm-cif.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': read-sm-cif.cc:1096:38: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bonded-pairs.lo bonded-pairs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bonded-pairs.cc -fPIC -DPIC -o .libs/bonded-pairs.o coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:892:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 892 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-analysis.lo helix-analysis.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-analysis.cc -fPIC -DPIC -o .libs/helix-analysis.o /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o elastic.lo elastic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c elastic.cc -fPIC -DPIC -o .libs/elastic.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-torsions.lo glyco-torsions.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-least-squares.lo coot-least-squares.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-least-squares.cc -fPIC -DPIC -o .libs/coot-least-squares.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-torsions.cc -fPIC -DPIC -o .libs/glyco-torsions.o In file included from elastic.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-overlaps.lo atom-overlaps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o In file included from atom-overlaps.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o reduce.lo reduce.cc In file included from glyco-torsions.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c reduce.cc -fPIC -DPIC -o .libs/reduce.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-selection-container.lo atom-selection-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-selection-container.cc -fPIC -DPIC -o .libs/atom-selection-container.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o contact-info.lo contact-info.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contact-info.cc -fPIC -DPIC -o .libs/contact-info.o In file included from atom-selection-container.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from reduce.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from atom-selection-container.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-shelx-ins.lo coot-shelx-ins.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o secondary-structure-headers.lo secondary-structure-headers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-shelx-ins.cc -fPIC -DPIC -o .libs/coot-shelx-ins.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c secondary-structure-headers.cc -fPIC -DPIC -o .libs/secondary-structure-headers.o In file included from coot-shelx-ins.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from atom-selection-container.cc:915: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" 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-DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-eigens.cc -fPIC -DPIC -o .libs/fast-eigens.o In file included from contacts-by-bricks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from merge-atom-selections.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from lidia-core-functions.cc:29: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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"-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c strand-fragments.cc -fPIC -DPIC -o .libs/strand-fragments.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sfcalc-genmap.cc -fPIC -DPIC -o .libs/sfcalc-genmap.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cablam-markup.lo cablam-markup.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam-markup.cc -fPIC -DPIC -o .libs/cablam-markup.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_shiftfield.lo coot_shiftfield.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shiftfield.lo shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_shiftfield.cpp -fPIC -DPIC -o .libs/coot_shiftfield.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shiftfield.cpp -fPIC -DPIC -o .libs/shiftfield.o In file included from cablam-markup.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from coot_shiftfield.h:31, from coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': coot_shiftfield.cpp:153:81: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot_shiftfield.cpp:209:29: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fib-sphere.lo fib-sphere.cc coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fib-sphere.cc -fPIC -DPIC -o .libs/fib-sphere.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o polar-atoms.lo polar-atoms.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from shiftfield.h:31, from shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c polar-atoms.cc -fPIC -DPIC -o .libs/polar-atoms.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 3d-texture.lo 3d-texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c 3d-texture.cc -fPIC -DPIC -o .libs/3d-texture.o /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-molecules.lo merge-molecules.cc coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-molecules.cc -fPIC -DPIC -o .libs/merge-molecules.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fragment-container.lo fragment-container.cc coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fragment-container.cc -fPIC -DPIC -o .libs/fragment-container.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mutate.lo mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mutate.cc -fPIC -DPIC -o .libs/mutate.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-C-and-N-terminii.lo merge-C-and-N-terminii.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cylinder.lo cylinder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder.cc -fPIC -DPIC -o .libs/cylinder.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-C-and-N-terminii.cc -fPIC -DPIC -o .libs/merge-C-and-N-terminii.o In file included from mutate.cc:676: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON 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-DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder-with-rotation-translation.cc -fPIC -DPIC -o .libs/cylinder-with-rotation-translation.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o oct.lo oct.cc In file included from merge-C-and-N-terminii.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 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"-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c prideout-octasphere.cc -fPIC -DPIC -o .libs/prideout-octasphere.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-lsq.lo coot-coord-lsq.cc In file included from positron.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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--tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-tree-extras.lo coot-tree-extras.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o water-coordination.lo water-coordination.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-tree-extras.cc -fPIC -DPIC -o .libs/coot-tree-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c water-coordination.cc -fPIC -DPIC -o .libs/water-coordination.o In file included from coot-coord-extras.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lsq-improve.lo lsq-improve.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lsq-improve.cc -fPIC -DPIC -o .libs/lsq-improve.o In file included from coot-coord-lsq.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-tree-extras.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-glyco.lo coot-coord-utils-glyco.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-glyco.cc -fPIC -DPIC -o .libs/coot-coord-utils-glyco.o In file included from coot-coord-utils-glyco.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o jed-flip.lo jed-flip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c jed-flip.cc -fPIC -DPIC -o .libs/jed-flip.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-fffear.lo coot-fffear.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o In file included from ../mini-mol/mini-mol.hh:29, from coot-coord-extras.hh:33, from jed-flip.hh:32, from jed-flip.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-map-heavy.hh:30, from coot-fffear.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-map-heavy.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-harmonics.lo spherical-harmonics.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o segmap.lo segmap.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-harmonics.cc -fPIC -DPIC -o .libs/spherical-harmonics.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c segmap.cc -fPIC -DPIC -o .libs/segmap.o /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo positron.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/positron.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/protein_db/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs ../lidia-core/.libs/libcoot-lidia-core.so ../protein_db/.libs/libcoot-protein-db.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so.0" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lpthread -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so.0" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so") libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lpthread /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o mmrrcc mmrrcc.o ./libcoot-map-utils.la ./libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/mmrrcc mmrrcc.o ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so") libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/coot-utils' Making all in angles make[3]: Entering directory '/var/www/debian/coot/coot/angles' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-AngleInfo.la -rpath /usr/lib/aarch64-linux-gnu libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O1 -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-AngleInfo.so.0 -o .libs/libcoot-AngleInfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so.0" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so") libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/angles' Making all in ccp4mg-utils make[3]: Entering directory '/var/www/debian/coot/coot/ccp4mg-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geomutil.lo geomutil.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mgtree.lo mgtree.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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-DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix.lo matrix.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o quat.lo quat.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c quat.cc -fPIC -DPIC -o .libs/quat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix.cc -fPIC -DPIC -o .libs/matrix.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libccp4mg-utils.la -rpath /usr/lib/aarch64-linux-gnu geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng16 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so.0" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so.0") libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so") libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/ccp4mg-utils' Making all in db-main make[3]: Entering directory '/var/www/debian/coot/coot/db-main' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 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-DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-main.cc -fPIC -DPIC -o .libs/db-main.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o In file included from db-main.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from db-strands.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/db-main.o .libs/db-strands.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so.0" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so") libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/db-main' Making all in analysis make[3]: Entering directory '/var/www/debian/coot/coot/analysis' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfactan.o bfactan.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfkurt.lo bfkurt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mogul.lo mogul.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o kolmogorov.lo kolmogorov.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stats.lo stats.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cablam.lo cablam.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o typed-distances.lo typed-distances.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o b-factor-histogram.lo b-factor-histogram.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stats.cc -fPIC -DPIC -o .libs/stats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mogul.cc -fPIC -DPIC -o .libs/mogul.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam.cc -fPIC -DPIC -o .libs/cablam.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c b-factor-histogram.cc -fPIC -DPIC -o .libs/b-factor-histogram.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c kolmogorov.cc -fPIC -DPIC -o .libs/kolmogorov.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c typed-distances.cc -fPIC -DPIC -o .libs/typed-distances.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bfkurt.cc -fPIC -DPIC -o .libs/bfkurt.o In file included from stats.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o daca.lo daca.cc In file included from b-factor-histogram.cc:288: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c daca.cc -fPIC -DPIC -o .libs/daca.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna-backbone.lo rna-backbone.cc In file included from kolmogorov.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna-backbone.cc -fPIC -DPIC -o .libs/rna-backbone.o In file included from mogul.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mogul.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from daca.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from rna-backbone.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so.0" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so") libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-bfactan bfactan.o ./.libs/libcoot-analysis.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 make[3]: Leaving directory '/var/www/debian/coot/coot/analysis' Making all in cootaneer make[3]: Entering directory '/var/www/debian/coot/coot/cootaneer' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-lib.lo buccaneer-lib.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-prot.lo buccaneer-prot.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-sequence.lo buccaneer-sequence.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-prot.cpp -fPIC -DPIC -o .libs/buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-lib.cpp -fPIC -DPIC -o .libs/buccaneer-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-sequence.cpp -fPIC -DPIC -o .libs/buccaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootaneer-sequence.cpp -fPIC -DPIC -o .libs/cootaneer-sequence.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootaneer.la -rpath /usr/lib/aarch64-linux-gnu buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chirals.lo chirals.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ng.cc -fPIC -DPIC -o .libs/ng.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mods.cc -fPIC -DPIC -o .libs/mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-restraints.cc -fPIC -DPIC -o .libs/make-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chirals.cc -fPIC -DPIC -o .libs/chirals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-squareds.cc -fPIC -DPIC -o .libs/chi-squareds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c distortion.cc -fPIC -DPIC -o .libs/distortion.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o In file included from mini-rsr.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from mini-rsr.cc:58: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chirals.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from mods.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from make-restraints.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:174, from mini-rsr.cc:60: zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from chirals.cc:38: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from mini-rsr.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ In file included from simple-restraint.hh:162, from ng.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from chi-squareds.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from distortion.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from simple-restraint.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flanking.lo flanking.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gradients.lo gradients.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flanking.cc -fPIC -DPIC -o .libs/flanking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gradients.cc -fPIC -DPIC -o .libs/gradients.o ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints.lo extra-restraints.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints.cc -fPIC -DPIC -o .libs/extra-restraints.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pepflip.lo pepflip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o In file included from simple-restraint.hh:162, from flanking.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from gradients.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from extra-restraints.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o regularize-minimol.lo regularize-minimol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lograma.lo lograma.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lograma.cpp -fPIC -DPIC -o .libs/lograma.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o process-dfs-in-range.lo process-dfs-in-range.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c process-dfs-in-range.cc -fPIC -DPIC -o .libs/process-dfs-in-range.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints-kk.lo extra-restraints-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints-kk.cc -fPIC -DPIC -o .libs/extra-restraints-kk.o In file included from simple-restraint.hh:162, from regularize-minimol.hh:27, from regularize-minimol.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint-kk.lo simple-restraint-kk.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-bonds.lo torsion-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint-kk.cc -fPIC -DPIC -o .libs/simple-restraint-kk.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-bonds.cc -fPIC -DPIC -o .libs/torsion-bonds.o In file included from simple-restraint.hh:162, from extra-restraints-kk.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from torsion-bonds.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-compare-residues.lo coot-compare-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o link-restraints.lo link-restraints.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-compare-residues.cc -fPIC -DPIC -o .libs/coot-compare-residues.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o parallel-planes.lo parallel-planes.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link-restraints.cc -fPIC -DPIC -o .libs/link-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c parallel-planes.cc -fPIC -DPIC -o .libs/parallel-planes.o In file included from simple-restraint.hh:162, from process-dfs-in-range.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from parallel-planes.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from coot-compare-residues.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from simple-restraint-kk.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pull-restraint.lo pull-restraint.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pull-restraint.cc -fPIC -DPIC -o .libs/pull-restraint.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from parallel-planes.cc:23: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trans-peptide.lo trans-peptide.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trans-peptide.cc -fPIC -DPIC -o .libs/trans-peptide.o In file included from simple-restraint.hh:162, from link-restraints.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-bond-deltas.lo model-bond-deltas.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o write-png.lo write-png.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-bond-deltas.cc -fPIC -DPIC -o .libs/model-bond-deltas.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c write-png.cc -fPIC -DPIC -o .libs/write-png.o In file included from simple-restraint.hh:162, from trans-peptide.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from zo-rama.hh:42, from write-png.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o zo-rama.lo zo-rama.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o crankshaft.lo crankshaft.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c crankshaft.cc -fPIC -DPIC -o .libs/crankshaft.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c zo-rama.cc -fPIC -DPIC -o .libs/zo-rama.o In file included from simple-restraint.hh:162, from pull-restraint.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi.lo phi-psi.cc In file included from zo-rama.hh:42, from crankshaft.hh:37, from crankshaft.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi.cc -fPIC -DPIC -o .libs/phi-psi.o In file included from zo-rama.hh:42, from zo-rama.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from model-bond-deltas.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o neutron.lo neutron.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c neutron.cc -fPIC -DPIC -o .libs/neutron.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from model-bond-deltas.cc:29: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from crankshaft.cc:36: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from crankshaft.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lv.o lv.cc crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ In file included from lv.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ In file included from lv.cc:29: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from neutron.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lpng16 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs -lpthread ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so.0" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" 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-I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o coot-ligand-validation-bin lv.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lpthread libtool: link: g++ -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g 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-lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lpthread make[3]: Leaving directory '/var/www/debian/coot/coot/ideal' Making all in ligand make[3]: Entering directory '/var/www/debian/coot/coot/ligand' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chi-angles-autogen.lo chi-angles-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-extras.cc -fPIC -DPIC -o .libs/ligand-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wiggly-ligand.cc -fPIC -DPIC -o .libs/wiggly-ligand.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles-autogen.cc -fPIC -DPIC -o .libs/chi-angles-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand.cc -fPIC -DPIC -o .libs/ligand.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c monomer-utils.cc -fPIC -DPIC -o .libs/monomer-utils.o In file included from find-ligand.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from ligand.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from residue_by_phi_psi.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from ligand.cc:69: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ligand.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from dunbrack.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ligand-extras.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/string:51, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from residue_by_phi_psi.cc:22: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t, std::is_move_assignable<_T2> >::value, std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/13/bits/stl_pair.h:744:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 744 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t, std::is_move_assignable<_T2> >::value, std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/13/bits/stl_pair.h:744:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 744 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In file included from ../ideal/simple-restraint.hh:162, from ../ideal/regularize-minimol.hh:27, from wiggly-ligand.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chi-angles.lo chi-angles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles.cc -fPIC -DPIC -o .libs/chi-angles.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-placement.lo helix-placement.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-placement.cc -fPIC -DPIC -o .libs/helix-placement.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fast-ss-search.lo fast-ss-search.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-ss-search.cc -fPIC -DPIC -o .libs/fast-ss-search.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body.lo rigid-body.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body.cc -fPIC -DPIC -o .libs/rigid-body.o In file included from ../mini-mol/mini-mol.hh:29, from rigid-body.hh:25, from rigid-body.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chi-angles.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from fast-ss-search.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ideal-rna.lo ideal-rna.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from helix-placement.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamers.lo richardson-rotamers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamers.cc -fPIC -DPIC -o .libs/richardson-rotamers.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamer.lo richardson-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamer.cc -fPIC -DPIC -o .libs/richardson-rotamer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer.cc -fPIC -DPIC -o .libs/rotamer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" 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-DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer-tables.lo rotamer-tables.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-tables.cc -fPIC -DPIC -o .libs/rotamer-tables.o In file included from rotamer.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" 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-fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dipole.lo dipole.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit 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-DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base-pairing.cc -fPIC -DPIC -o .libs/base-pairing.o In file included from rotamer-tables.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dipole.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o backrub-rotamer.lo backrub-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c backrub-rotamer.cc -fPIC -DPIC -o .libs/backrub-rotamer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace.lo trace.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace.cc -fPIC -DPIC -o .libs/trace.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace-2.lo trace-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace-2.cc -fPIC -DPIC -o .libs/trace-2.o In file included from backrub-rotamer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from trace.hh:29, from trace-2.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o multi-peptide.lo multi-peptide.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligands-db.lo ligands-db.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligands-db.cc -fPIC -DPIC -o .libs/ligands-db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c multi-peptide.cc -fPIC -DPIC -o .libs/multi-peptide.o In file included from ../mini-mol/mini-mol.hh:29, from multi-peptide.hh:32, from trace.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ligands-db.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o joining-residues.lo joining-residues.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c joining-residues.cc -fPIC -DPIC -o .libs/joining-residues.o trace.cc: In constructor 'coot::trace::trace(const clipper::Xmap&)': trace.cc:53:61: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::pair mv = util::mean_and_variance(xmap); | ^ In file included from ../ideal/simple-restraint.hh:162, from multi-peptide.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from multi-peptide.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from joining-residues.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ multi-peptide.cc: In function 'coot::minimol::fragment coot::multi_build_N_terminal_ALA(mmdb::Residue*, mmdb::Residue*, const std::string&, float, int, const protein_geometry&, const clipper::Xmap&, std::pair, bool)': multi-peptide.cc:701:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 701 | coot::multi_build_N_terminal_ALA(mmdb::Residue *res_p, | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-score-card.lo ligand-score-card.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain-densities.lo side-chain-densities.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-score-card.cc -fPIC -DPIC -o .libs/ligand-score-card.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain-densities.cc -fPIC -DPIC -o .libs/side-chain-densities.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tube-finder.lo tube-finder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tube-finder.cc -fPIC -DPIC -o .libs/tube-finder.o In file included from ../mini-mol/mini-mol.hh:29, from ligand-score-card.hh:31, from ligand-score-card.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o smith-waterman.lo smith-waterman.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c smith-waterman.cc -fPIC -DPIC -o .libs/smith-waterman.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain.lo side-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain.cc -fPIC -DPIC -o .libs/side-chain.o In file included from tube-finder.cc:30: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ In file included from side-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o refine-isolated-chain.lo refine-isolated-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c refine-isolated-chain.cc -fPIC -DPIC -o .libs/refine-isolated-chain.o In file included from smith-waterman.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-waters.o find-waters.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-ligands-db.o make-ligands-db.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from find-waters.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from side-chain-densities.cc:38: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o identify-protein.o identify-protein.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libres-tracer.lo libres-tracer.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-rsr-extend-fragments.lo rama-rsr-extend-fragments.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c libres-tracer.cc -fPIC -DPIC -o .libs/libres-tracer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-residue-by-3-phi-psi.lo new-residue-by-3-phi-psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-rsr-extend-fragments.cc -fPIC -DPIC -o .libs/rama-rsr-extend-fragments.o side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c new-residue-by-3-phi-psi.cc -fPIC -DPIC -o .libs/new-residue-by-3-phi-psi.o In file included from identify-protein.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o dSFMT.lo dSFMT.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c dSFMT.c -fPIC -DPIC -o .libs/dSFMT.o In file included from ../ideal/simple-restraint.hh:162, from refine-isolated-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from new-residue-by-3-phi-psi.cc:29: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from rama-rsr-extend-fragments.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from libres-tracer.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rama-rsr-extend-fragments.cc:32: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from libres-tracer.cc:46: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1932:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1932 | return std::make_pair(sum_forward, sum_backward); | ^ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/string:51, from /usr/include/c++/13/stdexcept:39, from ../coot-utils/coot-coord-utils.hh:26, from new-residue-by-3-phi-psi.cc:28: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t, std::is_move_assignable<_T2> >::value, std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/13/bits/stl_pair.h:744:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 744 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t, std::is_move_assignable<_T2> >::value, std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/13/bits/stl_pair.h:744:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 744 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~ libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:496:67: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 496 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1940:89: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1940 | std::pair score = get_tree_scores(tree); | ^ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/ideal/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/cootaneer/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/db-main/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ccp4mg-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/analysis/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so.0" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../ccp4mg-utils/libccp4mg-utils.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o identify-protein-bin identify-protein.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../cootaneer/libcootaneer.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../cootaneer/libcootaneer.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/identify-protein-bin identify-protein.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../cootaneer/.libs/libcootaneer.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/findligand-bin find-ligand.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../cootaneer/.libs/libcootaneer.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/findwaters-bin find-waters.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -fopenmp libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:481:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 481 | make_spin_scored_pairs(const std::vector > &atom_pairs_within_distance, | ^~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/ligand/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ideal/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath 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-fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so.0" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so") libtool: link: ( cd ".libs" && rm -f "libcoot-res-tracer.la" && ln -s "../libcoot-res-tracer.la" "libcoot-res-tracer.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/ligand' Making all in coords make[3]: Entering directory '/var/www/debian/coot/coot/coords' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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cos-sin.lo cos-sin.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection 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-DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmdb.lo mmdb.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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-DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo-bonds.cc -fPIC -DPIC -o .libs/phenix-geo-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-crystal.cc -fPIC -DPIC -o .libs/mmdb-crystal.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Cartesian.cc -fPIC -DPIC -o .libs/Cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb.cc -fPIC -DPIC -o .libs/mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Bond_lines.cc -fPIC -DPIC -o .libs/Bond_lines.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cos-sin.cc -fPIC -DPIC -o .libs/cos-sin.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-extras.cc -fPIC -DPIC -o .libs/mmdb-extras.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Bond_lines_ext.lo Bond_lines_ext.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Bond_lines_ext.cc -fPIC -DPIC -o .libs/Bond_lines_ext.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-close.lo coot-close.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-crystal.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phenix-geo.lo phenix-geo.cc In file included from mmdb-crystal.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo.cc -fPIC -DPIC -o .libs/phenix-geo.o In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from phenix-geo-bonds.cc:25: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer-markup.lo rotamer-markup.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-markup.cc -fPIC -DPIC -o .libs/rotamer-markup.o In file included from phenix-geo.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from Bond_lines.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from rotamer-markup.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-extras.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from Bond_lines.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o loop-path.lo loop-path.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmdb.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from mmdb.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c loop-path.cc -fPIC -DPIC -o .libs/loop-path.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ramachandran-validation.lo ramachandran-validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ramachandran-validation.cc -fPIC -DPIC -o .libs/ramachandran-validation.o /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/ligand/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/cootaneer/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../cootaneer/.libs/libcootaneer.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coords.so.0" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coords.so" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/coords' Making all in density-contour make[3]: Entering directory '/var/www/debian/coot/coot/density-contour' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Vectors.lo Vectors.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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"-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c occlusion.cc -fPIC -DPIC -o .libs/occlusion.o In file included from CIsoSurface.cpp:1244: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from density-contour-triangles.cc:155: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from gaussian-surface.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ CIsoSurface.cpp: In member function 'coot::CartesianPairInfo CIsoSurface::GenerateSurface_from_NXmap(const clipper::NXmap&, T, float, coot::Cartesian, int) [with T = float]': CIsoSurface.cpp:786:24: warning: 'grid_min' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ In file included from ../coords/Cartesian.h:31, from CIsoSurface.h:44, from CIsoSurface.cpp:55: /usr/include/clipper/core/coords.h:590:5: note: by argument 2 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:784:24: note: 'grid_min' declared here 784 | clipper::Coord_grid grid_min; | ^~~~~~~~ CIsoSurface.cpp:786:24: warning: 'grid_max' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ /usr/include/clipper/core/coords.h:590:5: note: by argument 3 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:785:24: note: 'grid_max' declared here 785 | clipper::Coord_grid grid_max; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/coords/.libs ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib 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1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphical_skel.lo graphical_skel.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/angles/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ideal/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coords/.libs ../angles/.libs/libcoot-AngleInfo.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so.0" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so") libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/skeleton' Making all in high-res make[3]: Entering directory '/var/www/debian/coot/coot/high-res' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o high-res.lo high-res.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-atom-graph.lo coot-atom-graph.cc 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../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-assignment.lo sequence-assignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-atom-graph.cc -fPIC -DPIC -o .libs/coot-atom-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c high-res.cc -fPIC -DPIC -o .libs/high-res.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-distortions.cc -fPIC -DPIC -o .libs/residue-distortions.o In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from residue-distortions.cc:21: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from coot-atom-graph.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from high-res.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from sequence-assignment.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from high-res.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -Wl,-rpath 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1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CalphaBuild.lo CalphaBuild.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircleNode.cpp -fPIC -DPIC -o .libs/CXXCircleNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFortranFile.cpp -fPIC -DPIC -o .libs/CXXFortranFile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircle.cpp -fPIC -DPIC -o .libs/CXXCircle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXNewHood.cpp -fPIC -DPIC -o .libs/CXXNewHood.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCoord.cpp -fPIC -DPIC -o .libs/CXXCoord.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereNode.cpp -fPIC -DPIC -o .libs/CXXSphereNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereElement.cpp -fPIC -DPIC -o .libs/CXXSphereElement.o CXXFortranFile.cpp: In member function 'size_t CXXFortranFile::getFortranData(char*, size_t, size_t, int)': CXXFortranFile.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 192 | for (int i=0; i&, double, std::map >&)': CXXCircleNode.cpp:176:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<__gnu_cxx::__normal_iterator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 176 | for (int iCentralProbe = 0; iCentralProbe < centralBin.size(); iCentralProbe++){ | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSphereTriangleEdge.lo CXXSphereTriangleEdge.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o CXXSphereElement.cpp: In copy constructor 'CXXSphereElement::CXXSphereElement(const CXXSphereElement&)': CXXSphereElement.cpp:279:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 279 | for (int i=0; i&)': CXXSphereElement.cpp:673:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 673 | for (int i=0; i&, mmdb::Manager*, int)': CXXSurface.cpp:497:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 497 | for (int i=0; i< nVerts; i++){ | ~^~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithVectorData(size_t, std::string, size_t, double*)': CXXSurface.cpp:585:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 585 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithPointerData(size_t, std::string, size_t, void**)': CXXSurface.cpp:599:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 599 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::setCoord(const std::string&, size_t, const CXXCoord&)': CXXSurface.cpp:817:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 817 | if (int(vertices.size()) <= iVertex){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ CXXSurface.cpp: In member function 'int CXXSurface::getCoord(size_t, size_t, double*)': CXXSurface.cpp:950:14: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] 950 | if (type <= int(vectors.size())){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'void CXXSurface::compress(double)': CXXSurface.cpp:1013:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1013 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1015 | for (int j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1031 | for (int i=0; i=compareStart && !iEquivalent; | ~~~~~~~~~^~~~~~~~~~~~~~ CXXSpace.cpp: In constructor 'CXXSpace::CXXSpace(float, float, float, float, float, float, float, float)': CXXSpace.cpp:51:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~~~^~~~ CXXSpace.cpp:51:104: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~^~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridCharge(int, int, int)': CXXSpace.cpp:184:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridSolvationParameter(int, int, int)': CXXSpace.cpp:203:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getEpsilonKappaSq(int, int, int)': CXXSpace.cpp:222:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getPotential(int, int, int)': CXXSpace.cpp:240:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getBoundaryMap(int, int, int)': CXXSpace.cpp:261:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'int CXXSpace::dumpSpaceSlice(int, int, int)': CXXSpace.cpp:507:23: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 507 | if (dimension > 2 | dimension < 0) { | ~~~~~~~~~~^~~ CXXSpace.cpp:531:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 531 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:533:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 533 | break; | ^~~~~ CXXSpace.cpp:538:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 538 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:541:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 541 | break; | ^~~~~ CXXSpace.cpp:578:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 578 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:581:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 581 | break; | ^~~~~ CXXSpace.cpp:586:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 586 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:590:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 590 | break; | ^~~~~ CXXSpace.cpp:620:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 620 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:623:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 623 | break; | ^~~~~ CXXSpace.cpp:628:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 628 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:631:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 631 | break; | ^~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXUtils.lo CXXUtils.cpp CXXCreator.cpp: In member function 'int CXXCreator::distributeAtomCharge(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:261:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:261:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:289:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:289:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:311:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:311:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'double CXXCreator::getGridVolumeOfAtom(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:389:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:389:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:414:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:414:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:433:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:433:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::evolve(int, double)': CXXCreator.cpp:789:34: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 789 | for (size_t i = 0; i < space->getDimI(); i++) { | ~~^~~~~~~~~~~~~~~~~~ CXXCreator.cpp:793:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 793 | for (size_t j=0; jgetDimJ(); j++) largestChangeOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:796:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 796 | for (size_t j=0; jgetDimJ(); j++) largestPotentialOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:804:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 804 | for (size_t j = 0; j < passableSpace->getDimJ(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:809:42: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 809 | for (size_t k = 0; k < passableSpace->getDimK(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:812:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 812 | if (((i+j+k)%2) == (n%2)) { | ~~~~~~~~~~~~^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXBall.lo CXXBall.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceMaker.lo CXXSurfaceMaker.cpp CXXFFTSolventMap.cpp: In constructor 'SolventMap::SolventMap(fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real)': CXXFFTSolventMap.cpp:32:25: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 32 | if (probeRadius < 0 | gridSpacing < 0) { | ~~~~~~~~~~~~^~~ CXXFFTSolventMap.cpp: In member function 'int SolventMap::convoluteSolidProbe(fftw_real, int, int, float)': CXXFFTSolventMap.cpp:361:22: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:59: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:72: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceMaker.cpp -fPIC -DPIC -o .libs/CXXSurfaceMaker.o CXXFFTSolventMap.cpp: In member function 'int SolventMap::dumpXSlice(int, int, int)': CXXFFTSolventMap.cpp:743:21: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 743 | if (SliceNr > dim[0] | SliceNr < 1) { | ~~~~~~~~^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXBall.cpp -fPIC -DPIC -o .libs/CXXBall.o CXXSurfaceMaker.cpp:431:2: warning: #warning Compiling for OMP [-Wcpp] 431 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp:569:2: warning: #warning Compiling for OMP [-Wcpp] 569 | #warning Compiling for OMP | ^~~~~~~ CXXBall.cpp:87:2: warning: #warning Compiling for OMP [-Wcpp] 87 | #warning Compiling for OMP | ^~~~~~~ CXXBall.cpp:157:2: warning: #warning Compiling for OMP [-Wcpp] 157 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateVDWFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:193:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 193 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:196:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 196 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:198:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 198 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:204:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 204 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateAccessibleFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 255 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:258:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 258 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:260:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 260 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:266:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 266 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:509:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 509 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:512:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 512 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:514:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 514 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:517:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 517 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:520:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 520 | for (int i = 0; i < reentrantProbes.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:522:9: warning: deleting object of polymorphic class type 'CXXReentrantProbeBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 522 | delete static_cast(reentrantProbes[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'SurfaceParameters CXXSurfaceMaker::measuredProperties()': CXXSurfaceMaker.cpp:571:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 571 | for (int iChildSurface = 0; iChildSurface < childSurfaces.size(); iChildSurface++) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ CXXBall.cpp: In static member function 'static int CXXBall::triangulateBalls(std::vector&, std::vector&, double, CXXSurfaceMaker*, int)': CXXBall.cpp:88:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 88 | for (int i=0; i< nBalls; i++){ | ~^~~~~~~~ CXXBall.cpp:93:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 93 | if (!(i%100) || i==nBalls-1) { | ~^~~~~~~~~~ CXXBall.cpp:129:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 160 | for (int i=0; i&, std::vector&, std::map >&)': CXXBall.cpp:295:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 295 | for (int iBall=0; iBall< balls.size(); iBall++){ | ~~~~~^~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libMoleculesToTrianglesCXXSurface.la -rpath /usr/lib/aarch64-linux-gnu CXXCircle.lo CXXCircleNode.lo CXXCoord.lo CXXFortranFile.lo CXXNewHood.lo CXXSphereElement.lo CXXSphereNode.lo CXXSphereTriangle.lo CXXSphereTriangleEdge.lo CXXSurface.lo CXXSurfaceVertex.lo CXXTorusElement.lo CXXTorusNode.lo CXXTriangle.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXCreator.lo CXXSpace.lo CXXFFTSolventMap.lo CXXChargeTable.lo CXXException.lo CXXUtils.lo CXXBall.lo CXXSurfaceMaker.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/CXXCircle.o .libs/CXXCircleNode.o .libs/CXXCoord.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXSphereElement.o .libs/CXXSphereNode.o .libs/CXXSphereTriangle.o .libs/CXXSphereTriangleEdge.o .libs/CXXSurface.o .libs/CXXSurfaceVertex.o .libs/CXXTorusElement.o .libs/CXXTorusNode.o .libs/CXXTriangle.o .libs/CXXQADSurface.o .libs/CXXQADSurfaceStaticData.o .libs/CXXCreator.o .libs/CXXSpace.o .libs/CXXFFTSolventMap.o .libs/CXXChargeTable.o .libs/CXXException.o .libs/CXXUtils.o .libs/CXXBall.o .libs/CXXSurfaceMaker.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXSurface.so.0 -o .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so.0" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.la" && ln -s "../libMoleculesToTrianglesCXXSurface.la" "libMoleculesToTrianglesCXXSurface.la" ) make[4]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface' Making all in CXXClasses make[4]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo `test -f 'AtomPropertyRampColorRule.cpp' || echo './'`AtomPropertyRampColorRule.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo `test -f 'DirectedPositionedEntity.cpp' || echo './'`DirectedPositionedEntity.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Representation.lo `test -f 'Representation.cpp' || echo './'`Representation.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo `test -f 'BallsPrimitive.cpp' || echo './'`BallsPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo `test -f 'DiscreteSegment.cpp' || echo './'`DiscreteSegment.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo `test -f 'RepresentationInstance.cpp' || echo './'`RepresentationInstance.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo `test -f 'BondsPrimitive.cpp' || echo './'`BondsPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo `test -f 'DisplayPrimitive.cpp' || echo './'`DisplayPrimitive.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AtomPropertyRampColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BallsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BondsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DisplayPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DiscreteSegment.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DirectedPositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Representation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o In file included from ColorRule.h:29, from AtomPropertyRampColorRule.h:27, from AtomPropertyRampColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from NRStuff.h:30, from DiscreteSegment.h:26, from DiscreteSegment.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from DisplayPrimitive.h:32, from DisplayPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from DisplayPrimitive.h:32, from Representation.h:36, from Representation.cpp:33: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from RotatedTranslatedScaledEntity.h:28, from RepresentationInstance.h:32, from RepresentationInstance.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from DisplayPrimitive.h:32, from BondsPrimitive.h:28, from BondsPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from BallsPrimitive.h:33, from BallsPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from PositionedEntity.h:28, from DirectedPositionedEntity.h:28, from DirectedPositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateNormals()': DiscreteSegment.cpp:44:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 44 | for (int i=1; i<(calphas.size()-1); i++){ | ~^~~~~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::smoothBetas()': DiscreteSegment.cpp:83:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for (int iCalpha=0; iCalpha::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | && iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ DiscreteSegment.cpp:98:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 98 | if (iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateSplines()': DiscreteSegment.cpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 135 | for (int i=0; i::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo `test -f 'RotatedTranslatedScaledEntity.cpp' || echo './'`RotatedTranslatedScaledEntity.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RotatedTranslatedScaledEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo `test -f 'BoxSectionPrimitive.cpp' || echo './'`BoxSectionPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Light.lo `test -f 'Light.cpp' || echo './'`Light.cpp In file included from RotatedTranslatedScaledEntity.h:28, from RotatedTranslatedScaledEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from oglPolyhedron.h:29, from BallsPrimitive.cpp:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo `test -f 'CXXMatrix.cpp' || echo './'`CXXMatrix.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BoxSectionPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o BallsPrimitive.cpp: In member function 'virtual void BallsPrimitive::generateArrays()': BallsPrimitive.cpp:95:39: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 95 | for (int iVertex = 0; iVertex < ((Polyhedron *)poly)->nVertices(); iVertex++){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BallsPrimitive.cpp:109:35: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 109 | for (int iFace = 0; iFace < ((Polyhedron *)poly)->nFaces(); iFace++){ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Light.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo `test -f 'MolecularRepresentation.cpp' || echo './'`MolecularRepresentation.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXMatrix.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from CylindersPrimitive.h:29, from BoxSectionPrimitive.h:31, from BoxSectionPrimitive.cpp:32: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from RotatedTranslatedScaledEntity.h:28, from Light.h:29, from Light.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo `test -f 'SecondaryColorScheme.cpp' || echo './'`SecondaryColorScheme.cpp In file included from CXXMatrix.h:28, from CXXMatrix.cpp:24: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SecondaryColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo `test -f 'MyMolecule.cpp' || echo './'`MyMolecule.cpp In file included from ColorRule.h:29, from ColorScheme.h:32, from SecondaryColorScheme.h:29, from SecondaryColorScheme.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from MyMolecule.h:28, from MolecularRepresentation.h:32, from MolecularRepresentation.cpp:27: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo `test -f 'SolidColorRule.cpp' || echo './'`SolidColorRule.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MyMolecule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorRule.lo `test -f 'ColorRule.cpp' || echo './'`ColorRule.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SolidColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-NRStuff.lo `test -f 'NRStuff.cpp' || echo './'`NRStuff.cpp In file included from MyMolecule.h:28, from MyMolecule.cpp:27: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | BoxSectionPrimitive.cpp: In member function 'virtual void BoxSectionPrimitive::generateArrays()': BoxSectionPrimitive.cpp:72:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 72 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ BoxSectionPrimitive.cpp:105:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 105 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o In file included from ColorRule.h:29, from SolidColorRule.h:27, from SolidColorRule.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c NRStuff.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o ColorScheme.h:95:23: warning: 'virtual FCXXCoord ColorScheme::colorForAtom(const mmdb::Atom*, std::map, int>&)' was hidden [-Woverloaded-virtual=] 95 | virtual FCXXCoord colorForAtom(const mmdb::Atom* atom, std::map, int> &handles){ | ^~~~~~~~~~~~ SecondaryColorScheme.h:52:23: note: by 'virtual FCXXCoord SecondaryColorScheme::colorForAtom(mmdb::Atom*)' 52 | virtual FCXXCoord colorForAtom(mmdb::Atom* atom){ | ^~~~~~~~~~~~ In file included from ColorRule.h:29, from ColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo `test -f 'SpherePrimitive.cpp' || echo './'`SpherePrimitive.cpp In file included from NRStuff.h:30, from NRStuff.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SpherePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o In file included from MolecularRepresentation.cpp:28: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i&, const FCXXCoord&)': DishyBase.h:119:14: warning: 'DishyBase_t::centre' will be initialized after [-Wreorder] 119 | FCXXCoord centre; | ^~~~~~ DishyBase.h:118:14: warning: 'FCXXCoord DishyBase_t::normal' [-Wreorder] 118 | FCXXCoord normal; | ^~~~~~ DishyBase.h:104:4: warning: when initialized here [-Wreorder] 104 | DishyBase_t(const FCXXCoord ¢re_in, const FCXXCoord &normal_in, const float &rad_in, | ^~~~~~~~~~~ DishyBase.h:120:11: warning: 'DishyBase_t::radius' will be initialized after [-Wreorder] 120 | double radius; | ^~~~~~ DishyBase.h:115:30: warning: 'std::vector DishyBase_t::ribose_atoms' [-Wreorder] 115 | std::vector ribose_atoms; // in a particular order: (O4', C1', C2', C3', C4') | ^~~~~~~~~~~~ DishyBase.h:104:4: warning: when initialized here [-Wreorder] 104 | DishyBase_t(const FCXXCoord ¢re_in, const FCXXCoord &normal_in, const float &rad_in, | ^~~~~~~~~~~ In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30, from MolecularRepresentation.cpp:29: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from DisplayPrimitive.h:32, from SpherePrimitive.h:29, from SpherePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from MyMolecule.cpp:36: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i&, const FCXXCoord&)': DishyBase.h:119:14: warning: 'DishyBase_t::centre' will be initialized after [-Wreorder] 119 | FCXXCoord centre; | ^~~~~~ DishyBase.h:118:14: warning: 'FCXXCoord DishyBase_t::normal' [-Wreorder] 118 | FCXXCoord normal; | ^~~~~~ DishyBase.h:104:4: warning: when initialized here [-Wreorder] 104 | DishyBase_t(const FCXXCoord ¢re_in, const FCXXCoord &normal_in, const float &rad_in, | ^~~~~~~~~~~ DishyBase.h:120:11: warning: 'DishyBase_t::radius' will be initialized after [-Wreorder] 120 | double radius; | ^~~~~~ DishyBase.h:115:30: warning: 'std::vector DishyBase_t::ribose_atoms' [-Wreorder] 115 | std::vector ribose_atoms; // in a particular order: (O4', C1', C2', C3', C4') | ^~~~~~~~~~~~ DishyBase.h:104:4: warning: when initialized here [-Wreorder] 104 | DishyBase_t(const FCXXCoord ¢re_in, const FCXXCoord &normal_in, const float &rad_in, | ^~~~~~~~~~~ MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawRibbon()': MolecularRepresentation.cpp:450:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 450 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawCalphas()': MolecularRepresentation.cpp:648:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 648 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo `test -f 'ColorScheme.cpp' || echo './'`ColorScheme.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o In file included from ColorRule.h:29, from ColorScheme.h:32, from ColorScheme.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo `test -f 'Polyhedron.cpp' || echo './'`Polyhedron.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Polyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo `test -f 'SticksPrimitive.cpp' || echo './'`SticksPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo `test -f 'CompoundSelection.cpp' || echo './'`CompoundSelection.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SticksPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CompoundSelection.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o ColorScheme.cpp: In static member function 'static std::shared_ptr ColorScheme::colorRampChainsScheme()': ColorScheme.cpp:61:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 61 | for (int i=0; i, SurfaceType, float, float)': SurfacePrimitive.cpp:145:42: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 145 | for (int iVertex = 0; iVertex::size_type' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ CylindersPrimitive.cpp:113:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 113 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo `test -f 'oglPolyhedron.cpp' || echo './'`oglPolyhedron.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c oglPolyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o In file included from Polyhedron.h:32, from oglPolyhedron.h:29, from oglPolyhedron.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo `test -f 'MolecularRepresentationInstance.cpp' || echo './'`MolecularRepresentationInstance.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Quaternion.lo `test -f 'Quaternion.cpp' || echo './'`Quaternion.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Quaternion.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Vector2.lo `test -f 'Vector2.cpp' || echo './'`Vector2.cpp oglPolyhedron.cpp: In member function 'virtual void oglPolyhedron::generateArrays()': oglPolyhedron.cpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 48 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 63 | for (int i=0; i >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i&, const FCXXCoord&)': DishyBase.h:119:14: warning: 'DishyBase_t::centre' will be initialized after [-Wreorder] 119 | FCXXCoord centre; | ^~~~~~ DishyBase.h:118:14: warning: 'FCXXCoord DishyBase_t::normal' [-Wreorder] 118 | FCXXCoord normal; | ^~~~~~ DishyBase.h:104:4: warning: when initialized here [-Wreorder] 104 | DishyBase_t(const FCXXCoord ¢re_in, const FCXXCoord &normal_in, const float &rad_in, | ^~~~~~~~~~~ DishyBase.h:120:11: warning: 'DishyBase_t::radius' will be initialized after [-Wreorder] 120 | double radius; | ^~~~~~ DishyBase.h:115:30: warning: 'std::vector DishyBase_t::ribose_atoms' [-Wreorder] 115 | std::vector ribose_atoms; // in a particular order: (O4', C1', C2', C3', C4') | ^~~~~~~~~~~~ DishyBase.h:104:4: warning: when initialized here [-Wreorder] 104 | DishyBase_t(const FCXXCoord ¢re_in, const FCXXCoord &normal_in, const float &rad_in, | ^~~~~~~~~~~ In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from FlatFanPrimitive.h:29, from FlatFanPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/.libs -L/usr/lib/aarch64-linux-gnu ../../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so.0" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.la" && ln -s "../libMoleculesToTrianglesCXXClasses.la" "libMoleculesToTrianglesCXXClasses.la" ) make[4]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses' make[4]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles' make[3]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles' Making all in pli make[3]: Entering directory '/var/www/debian/coot/coot/pli' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pi-stacking.lo pi-stacking.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pi-stacking.cc -fPIC -DPIC -o .libs/pi-stacking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.11 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-ligand-interactions.cc -fPIC -DPIC -o .libs/protein-ligand-interactions.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from pi-stacking.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from sdf-interface-for-export.hh:31, from sdf-interface.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from sdf-interface.cc:147: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/string:51, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from sdf-interface.cc:37: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:419:56: /usr/include/c++/13/bits/stl_pair.h:688:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 688 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:409:24: note: 'v' declared here 409 | clipper::Coord_orth v; | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu libtool: link: g++ -fPIC -DPIC -shared -nostdlib 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"libcoot-pli.so" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so") libtool: link: ( cd ".libs" && rm -f "libcoot-pli.la" && ln -s "../libcoot-pli.la" "libcoot-pli.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/pli' Making all in greg-tests make[3]: Entering directory '/var/www/debian/coot/coot/greg-tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/greg-tests' Making all in python-tests make[3]: Entering directory '/var/www/debian/coot/coot/python-tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/python-tests' Making all in cootilus make[3]: Entering directory '/var/www/debian/coot/coot/cootilus' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 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"-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-target.cpp -fPIC -DPIC -o .libs/nautilus-target.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-join.cpp -fPIC -DPIC -o .libs/nautilus-join.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nucleicacid_db.cpp -fPIC -DPIC -o .libs/nucleicacid_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-ss-find.cpp -fPIC -DPIC -o .libs/nautilus-ss-find.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-tools.cpp -fPIC -DPIC -o .libs/nautilus-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootilus-build.cpp -fPIC -DPIC -o .libs/cootilus-build.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootilus.la -rpath /usr/lib/aarch64-linux-gnu nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/nucleicacid_db.o .libs/nautilus-tools.o .libs/nautilus-ss-find.o .libs/nautilus-join.o .libs/nautilus-target.o .libs/cootilus-build.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootilus.so.0 -o .libs/libcootilus.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootilus.so.0" && ln -s "libcootilus.so.0.0.0" "libcootilus.so.0") libtool: link: (cd ".libs" && rm -f "libcootilus.so" && ln -s "libcootilus.so.0.0.0" "libcootilus.so") libtool: link: ( cd ".libs" && rm -f "libcootilus.la" && ln -s "../libcootilus.la" "libcootilus.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/cootilus' Making all in pyrogen make[3]: Entering directory '/var/www/debian/coot/coot/pyrogen' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time 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-D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints-boost.lo restraints-boost.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cairo-molecule.cc -fPIC -DPIC -o .libs/cairo-molecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c py-restraints.cc -fPIC -DPIC -o .libs/py-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmff-restraints.cc -fPIC -DPIC -o .libs/mmff-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints.cc -fPIC -DPIC -o .libs/restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom_types.cc -fPIC -DPIC -o .libs/atom_types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-boost.cc -fPIC -DPIC -o .libs/restraints-boost.o ../pyrogen/restraints.hh:57: Warning 389: operator[] ignored (consider using %extend) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pyrogen-swig.lo pyrogen-swig.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.11 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pyrogen-swig.cc -fPIC -DPIC -o .libs/pyrogen-swig.o In file included from cairo-molecule.hh:34, from cairo-molecule.cc:27: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cairo-molecule.hh:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from atom_types.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmff-restraints.hh:27, from mmff-restraints.cc:23: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../lidia-core/lig-build.hh: In instantiation of 'std::pair lig_build::molecule_t::ligand_extents() const [with Ta = coot::cairo_atom_t; Tb = coot::cairo_bond_t]': cairo-molecule.cc:687:70: required from here ../lidia-core/lig-build.hh:1503:7: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1503 | ligand_extents() const { | ^~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from ../pyrogen/restraints-private.hh:33, from ../pyrogen/restraints.hh:39, from pyrogen-swig.cc:5347: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from restraints.cc:26: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from restraints.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from restraints.cc:34: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from py-restraints.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../ideal/simple-restraint.hh:162, from restraints-boost.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-boost.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lcairo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so.0" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so.0") libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so") libtool: link: ( cd ".libs" && rm -f "libcoot_py_restraints.la" && ln -s "../libcoot_py_restraints.la" "libcoot_py_restraints.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python311 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/restraints-boost.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/pyrogen/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/pli/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ideal/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coords/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs ./.libs/libcoot_py_restraints.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so ../lidia-core/.libs/libcoot-lidia-core.so -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs 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"../pyrogen_boost.la" "pyrogen_boost.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor 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-Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/analysis/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ./.libs/libcoot_py_restraints.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../analysis/.libs/libcoot-analysis.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups 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-DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-validation.lo coot-molecule-validation.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-modelling.lo molecules-container-modelling.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-validation.cc -fPIC -DPIC -o .libs/coot-molecule-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-modelling.cc -fPIC -DPIC -o .libs/molecules-container-modelling.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container.lo molecules-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container.cc -fPIC -DPIC -o .libs/molecules-container.o In file included from coot-molecule-maps.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/residue_by_phi_psi.hh:37, from add-terminal-residue.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-bonds.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-molecule.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-validation.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../ideal/simple-restraint.hh:174, from coot-molecule.hh:45, from coot-molecule.cc:38: ../ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': ../ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-merge-molecules.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-modelling.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:45, from coot-molecule-maps.cc:36: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-ligand-fitting.lo molecules-container-ligand-fitting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-ligand-fitting.cc -fPIC -DPIC -o .libs/molecules-container-ligand-fitting.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container.cc:7: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-moltris.lo coot-molecule-moltris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-moltris.cc -fPIC -DPIC -o .libs/coot-molecule-moltris.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-replace-fragment.lo coot-molecule-replace-fragment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-replace-fragment.cc -fPIC -DPIC -o .libs/coot-molecule-replace-fragment.o In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28, from coot-molecule-moltris.cc:30: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd | ../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd | ../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd | ../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd | ../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd | ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from molecules-container.cc:762: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-backup.lo coot-molecule-backup.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-replace-fragment.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/wligand.hh:25, from molecules-container-ligand-fitting.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-backup.cc -fPIC -DPIC -o .libs/coot-molecule-backup.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-moltris.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule-backup.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45, from molecules-container.hh:19, from molecules-container-ligand-fitting.cc:6: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-bonds-instanced.lo coot-molecule-bonds-instanced.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds-instanced.cc -fPIC -DPIC -o .libs/coot-molecule-bonds-instanced.o In file included from coot-molecule.hh:45, from coot-molecule-backup.cc:29: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-molecule-backup.cc:32: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-mmrrcc.lo molecules-container-mmrrcc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-mmrrcc.cc -fPIC -DPIC -o .libs/molecules-container-mmrrcc.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from molecules-container-ligand-fitting.cc:432: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-refine.lo coot-molecule-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-refine.cc -fPIC -DPIC -o .libs/coot-molecule-refine.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-mmrrcc.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-bonds-instanced.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-refine.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-superpose.lo molecules-container-superpose.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-superpose.cc -fPIC -DPIC -o .libs/molecules-container-superpose.o molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': molecules-container-ligand-fitting.cc:344:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 344 | auto p = coot::util::mean_and_variance(xmap); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body-fit.lo rigid-body-fit.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body-fit.cc -fPIC -DPIC -o .libs/rigid-body-fit.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o moorhen-h-bonds.lo moorhen-h-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c moorhen-h-bonds.cc -fPIC -DPIC -o .libs/moorhen-h-bonds.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-bucca-ml-growing.lo molecules-container-bucca-ml-growing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-bucca-ml-growing.cc -fPIC -DPIC -o .libs/molecules-container-bucca-ml-growing.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-superpose.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body-fit.hh:7, from rigid-body-fit.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-bucca-ml-growing.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o instancing.lo instancing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c instancing.cc -fPIC -DPIC -o .libs/instancing.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-maps.lo molecules-container-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-maps.cc -fPIC -DPIC -o .libs/molecules-container-maps.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from moorhen-h-bonds.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-change-chain-id.lo coot-molecule-change-chain-id.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-change-chain-id.cc -fPIC -DPIC -o .libs/coot-molecule-change-chain-id.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-maps.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blender-mesh.lo blender-mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blender-mesh.cc -fPIC -DPIC -o .libs/blender-mesh.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-change-chain-id.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-blender.lo coot-molecule-blender.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-blender.cc -fPIC -DPIC -o .libs/coot-molecule-blender.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-blender.lo molecules-container-blender.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-blender.cc -fPIC -DPIC -o .libs/molecules-container-blender.o swig -o wrap-coot-api.cc -python -c++ coot-headless-api.i /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-molecules-container-swig.lo `test -f 'molecules-container-swig.cc' || echo './'`molecules-container-swig.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-swig.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-molecules-container-swig.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from coot-molecule-blender.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ molecules-container.hh:895: Warning 325: Nested class not currently supported (auto_read_mtz_info_t ignored) molecules-container.hh:982: Warning 325: Nested class not currently supported (r_factor_stats ignored) molecules-container.hh:1625: Warning 325: Nested class not currently supported (fit_ligand_info_t ignored) molecules-container.hh:1715: Warning 325: Nested class not currently supported (ltj_stats_t ignored) In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-swig.cc:6: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from molecules-container-blender.cc:3: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-wrap-coot-api.lo `test -f 'wrap-coot-api.cc' || echo './'`wrap-coot-api.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_GSL -I/usr/include -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.11 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wrap-coot-api.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-wrap-coot-api.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:41, from molecules-container.hh:19, from wrap-coot-api.cc:3383: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:45: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ligand/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/pli/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ideal/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/cootaneer/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/db-main/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ccp4mg-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/analysis/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/density-contour/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coords/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../ligand/.libs/libcoot-ligand.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../analysis/.libs/libcoot-analysis.so ../density-contour/.libs/libcoot-isosurface.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coords/.libs/libcoot-coords.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: link: (cd ".libs" && rm -f "libcoot-api.so.0" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-api.so" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so") libtool: link: ( cd ".libs" && rm -f "libcoot-api.la" && ln -s "../libcoot-api.la" "libcoot-api.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/api/.libs ./.libs/libcoot-api.so -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so.0" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so.0") libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so") libtool: link: ( cd ".libs" && rm -f "_coot_headless_api.la" && ln -s "../_coot_headless_api.la" "_coot_headless_api.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/api' Making all in layla make[3]: Entering directory '/var/www/debian/coot/coot/layla' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 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-I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c layla_embedded.cpp -fPIC -DPIC -o .libs/layla_embedded.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ui.cpp -fPIC -DPIC -o .libs/ui.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c state.cpp -fPIC -DPIC -o .libs/state.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c signals.cpp -fPIC -DPIC -o .libs/signals.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas.lo ligand_editor_canvas.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas.cpp -fPIC -DPIC -o .libs/ligand_editor_canvas.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/model.lo ligand_editor_canvas/model.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/model.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/model.o signals.cpp: In lambda function: signals.cpp:68:36: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 68 | if(gtk_combo_box_get_active(cb) == -1) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93, from signals.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:69:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 69 | gtk_combo_box_set_active(cb,0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply(GtkButton*, gpointer)': signals.cpp:73:34: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 73 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:83:39: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 83 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(molecule_combobox), smiles.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_monomer_id_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:96:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 96 | if(strcmp(gtk_combo_box_get_active_id(self),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_program_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:108:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 108 | if(strcmp(gtk_combo_box_get_active_id(self),"acedrg") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_input_format_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:121:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 121 | if(strcmp(gtk_combo_box_get_active_id(self),"molfile") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply_dialog_accepted(GtkButton*, gpointer)': signals.cpp:159:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 159 | if(strcmp(gtk_combo_box_get_active_id(GTK_COMBO_BOX(monomer_id_combobox)),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:160:73: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 160 | auto monomer_id = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(monomer_id_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:169:71: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 169 | auto program_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(program_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:172:76: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 172 | auto input_format_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(input_format_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:175:74: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 175 | const auto* molecule_smiles_cstr = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/tools.lo ligand_editor_canvas/tools.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/tools.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/tools.o In file included from main.cpp:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/render.lo ligand_editor_canvas/render.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python_utils.lo python_utils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/render.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/render.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python_utils.cpp -fPIC -DPIC -o .libs/python_utils.o ligand_editor_canvas/model.cpp: In member function 'std::pair coot::ligand_editor_canvas::CanvasMolecule::get_on_screen_coords(float, float) const': ligand_editor_canvas/model.cpp:144:85: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 144 | std::pair CanvasMolecule::get_on_screen_coords(float x, float y) const noexcept { | ^~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()': ligand_editor_canvas/model.cpp:564:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 564 | while(i!=ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:586:62: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] 586 | bool x_requirement = bond_ptr->second_atom_x > bond_ptr->first_atom_x == sign_of_y_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:588:62: warning: suggest parentheses around comparison in operand of '!=' [-Wparentheses] 588 | bool y_requirement = bond_ptr->second_atom_y <= bond_ptr->first_atom_y != sign_of_x_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:615:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 615 | if(j==ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::build_internal_molecule_representation(const RDGeom::INT_POINT2D_MAP&)': ligand_editor_canvas/model.cpp:786:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'std::tuple_element<0, const std::pair >::type' {aka 'const int'} [-Wsign-compare] 786 | auto the_other_atom_idx = first_atom_idx == atom_idx ? second_atom_idx : first_atom_idx; | ~~~~~~~~~~~~~~~^~~~~~~~~~~ ligand_editor_canvas/model.cpp: In lambda function: ligand_editor_canvas/model.cpp:872:68: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 872 | unsigned int the_other_atom_idx = bond->first_atom_idx == atom_idx ? bond->second_atom_idx : bond->first_atom_idx; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from python_utils.cpp:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from state.cpp:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ state.cpp: In member function 'void coot::layla::LaylaState::load_from_smiles()': state.cpp:147:39: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 147 | auto* load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:42, from ligand_editor_canvas/render.hpp:25, from ligand_editor_canvas/core.hpp:29, from ligand_editor_canvas.hpp:25, from state.hpp:24, from state.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:30, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: state.cpp: In lambda function: state.cpp:167:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 167 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:166:41: note: in expansion of macro 'G_CALLBACK' 166 | g_signal_connect(entry, "activate", G_CALLBACK(+[](GtkEntry* entry, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:176:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 176 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:175:48: note: in expansion of macro 'G_CALLBACK' 175 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:200:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 200 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 201 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 202 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 204 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 205 | "Error: Molecule could not be constructed.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 | e.what() | ~~~~~~~~ 207 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:189: /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:211:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 211 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_import_molecule()': state.cpp:221:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 221 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:246:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 246 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:293:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 293 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 294 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 295 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 297 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 298 | "Error: Monomer \"%s\" could not be found.\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | monomer_type.c_str() | ~~~~~~~~~~~~~~~~~~~~ 300 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:304:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 304 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::run_choose_element_dialog()': state.cpp:313:49: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 313 | auto* choose_element_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:337:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 337 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:336:48: note: in expansion of macro 'G_CALLBACK' 336 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:353:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 353 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 354 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 355 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 357 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 358 | "Error: Invalid symbol:\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | e.what() | ~~~~~~~~ 360 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:364:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 364 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_fetch_molecule()': state.cpp:374:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 374 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:396:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 396 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:429:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 429 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 430 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 431 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 433 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 434 | "Error: Molecule could not be fetched.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | e.what() | ~~~~~~~~ 436 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:440:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 440 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::save_file(unsigned int, const char*, GtkWindow*)': state.cpp:479:47: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 479 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 480 | parent, | ~~~~~~~ 481 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 483 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 484 | "Error: Molecule could not be saved to file.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 | e.what() | ~~~~~~~~ 486 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:487:24: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 487 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:570:56: warning: too many arguments for format [-Wformat-extra-args] 570 | "Nothing was chosen!", | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ state.cpp:566:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 566 | auto* message = gtk_message_dialog_new(window, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 567 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 569 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 570 | "Nothing was chosen!", | ~~~~~~~~~~~~~~~~~~~~~~ 571 | NULL); | ~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:572:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 572 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:515:60: note: in definition of macro 'g_signal_connect' 515 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:607:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 607 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 608 | GTK_WINDOW(source_object), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 611 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 612 | "Error: Molecule could not be loaded.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | e.what() | ~~~~~~~~ 614 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings():: [with auto:30 = std::shared_ptr]': /usr/include/c++/13/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' /usr/include/c++/13/bits/stl_algobase.h:2072:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' /usr/include/c++/13/bits/stl_algobase.h:2117:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' /usr/include/c++/13/bits/stl_algo.h:3923:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' ligand_editor_canvas/model.cpp:572:37: required from here ligand_editor_canvas/model.cpp:573:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:573:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int):: [with auto:35 = std::shared_ptr]': /usr/include/c++/13/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' /usr/include/c++/13/bits/stl_algobase.h:2072:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' /usr/include/c++/13/bits/stl_algobase.h:2117:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' /usr/include/c++/13/bits/stl_algo.h:3923:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' ligand_editor_canvas/model.cpp:928:31: required from here ligand_editor_canvas/model.cpp:929:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ligand_editor_canvas/model.cpp:929:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/core.lo ligand_editor_canvas/core.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.11 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/core.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/core.o ligand_editor_canvas.cpp: In function 'void on_hover(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': ligand_editor_canvas.cpp:240:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 240 | auto coords = target.get_on_screen_coords(atom.x, atom.y); | ^ In file included from ui.cpp:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand_editor_canvas/render.cpp: In member function 'std::pair<_graphene_point_t, _graphene_point_t> coot::ligand_editor_canvas::impl::MoleculeRenderContext::cropped_bond_coords(const graphene_point_t&, unsigned int, const graphene_point_t&, unsigned int)': ligand_editor_canvas/render.cpp:636:219: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 636 | std::pair MoleculeRenderContext::cropped_bond_coords(const graphene_point_t& first_atom, unsigned int first_atom_idx, const graphene_point_t& second_atom, unsigned int second_atom_idx) { | ^ ligand_editor_canvas/core.cpp: In member function 'void coot::ligand_editor_canvas::impl::WidgetCoreData::undo_edition()': ligand_editor_canvas/core.cpp:74:34: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 74 | if(this->state_stack->size() > this->state_stack_pos + 1) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:749:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 749 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:790:95: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 790 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ^ ligand_editor_canvas/render.cpp:792:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 792 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:823:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 823 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:947:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 947 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:995:5: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 995 | ); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1051:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1051 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1065:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1065 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:726:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 726 | void MoleculeRenderContext::draw_straight_wedge(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:726:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:726:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:747:63: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 747 | auto [origin_cropped,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:749:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 749 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:769:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 769 | void MoleculeRenderContext::draw_straight_dashed_bond(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:769:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:769:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:769:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:790:56: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 790 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:792:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 792 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:814:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 814 | void MoleculeRenderContext::draw_wavy_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:946:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 946 | void MoleculeRenderContext::draw_side_bond_line(const CanvasMolecule::Bond& bond, bool addOrSub, std::optional first_shortening_proportion, std::optional second_shortening_proportion) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:946:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:946:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:946:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:947:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 947 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:990:50: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 990 | auto [first_c,second_c] = cropped_bond_coords( | ~~~~~~~~~~~~~~~~~~~^ 991 | first_atom_centered, | ~~~~~~~~~~~~~~~~~~~~ 992 | bond.first_atom_idx, | ~~~~~~~~~~~~~~~~~~~~ 993 | second_atom_centered, | ~~~~~~~~~~~~~~~~~~~~~ 994 | bond.second_atom_idx | ~~~~~~~~~~~~~~~~~~~~ 995 | ); | ~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1050:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1050 | void MoleculeRenderContext::draw_centered_double_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1050:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1050:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1050:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1051:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1051 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1065:46: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1065 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-layla.so.0" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-layla.so" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so") libtool: link: ( cd ".libs" && rm -f "libcoot-layla.la" && ln -s "../libcoot-layla.la" "libcoot-layla.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o layla main.o libcoot-layla.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/layla main.o -lcurl ./.libs/libcoot-layla.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 make[3]: Leaving directory 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-I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation-graphs.lo validation-graphs.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation-information.lo validation-information.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view-widget.lo sequence-view-widget.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-validation-information.cc -fPIC -DPIC -o .libs/residue-validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-information.cc -fPIC -DPIC -o .libs/validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graphs.cc -fPIC -DPIC -o .libs/validation-graphs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view-widget.cc -fPIC -DPIC -o .libs/sequence-view-widget.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graph-widget.cc -fPIC -DPIC -o .libs/validation-graph-widget.o validation-graph-widget.cc: In function 'void coot_validation_graph_snapshot(GtkWidget*, GtkSnapshot*)': validation-graph-widget.cc:229:66: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 229 | GtkStyleContext* style_context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from validation-graph-widget.hh:28, from validation-graph-widget.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ validation-graph-widget.cc:230:32: warning: 'void gtk_style_context_get_color(GtkStyleContext*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 230 | gtk_style_context_get_color(style_context,&attribute_color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:263: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:112:6: note: declared here 112 | void gtk_style_context_get_color (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers 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-Wl,/var/www/debian/coot/coot/db-main/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ccp4mg-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/analysis/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 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-L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so.0" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so") libtool: link: ( cd ".libs" && rm -f "libcoot-validation-graphs.la" && ln -s "../libcoot-validation-graphs.la" "libcoot-validation-graphs.la" ) make[3]: Leaving directory '/var/www/debian/coot/coot/validation-graphs' Making all in src make[3]: Entering directory '/var/www/debian/coot/coot/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu 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-I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-analysis.cc -fPIC -DPIC -o .libs/c-interface-analysis.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c git-revision-count.cc -fPIC -DPIC -o .libs/git-revision-count.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-bonds.cc -fPIC -DPIC -o .libs/c-interface-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build.lo c-interface-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boids.cc -fPIC -DPIC -o .libs/boids.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build.cc -fPIC -DPIC -o .libs/c-interface-build.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-morph.lo c-interface-build-morph.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-morph.cc -fPIC -DPIC -o .libs/c-interface-build-morph.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-main-chain.lo c-interface-build-main-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-main-chain.cc -fPIC -DPIC -o .libs/c-interface-build-main-chain.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-build.cc:66: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-analysis.cc:36: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from atom-overlaps.cc:40: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-bonds.cc:49: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from init_coot_as_python_module.cc:37: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from boids.cc:108: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-build-morph.cc:65: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-build-main-chain.cc:63: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-analysis.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-morph.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-main-chain.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-side-chain.lo c-interface-build-side-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-side-chain.cc -fPIC -DPIC -o .libs/c-interface-build-side-chain.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-bonds.cc:42: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-build-side-chain.cc:66: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from init_coot_as_python_module.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-morph.cc:71: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-main-chain.cc:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-side-chain.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-symmetry.lo c-interface-build-symmetry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-symmetry.cc -fPIC -DPIC -o .libs/c-interface-build-symmetry.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-build-symmetry.cc:64: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-gui.lo c-interface-build-gui.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-gui.cc -fPIC -DPIC -o .libs/c-interface-build-gui.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-curlew.lo c-interface-curlew.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-curlew.cc -fPIC -DPIC -o .libs/c-interface-curlew.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-bonds.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-symmetry.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-build-gui.cc:59: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from atom-overlaps.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-gui.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build.cc:74: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from cc-interface.hh:39, from atom-overlaps.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-curlew.cc:70: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-database.lo c-interface-database.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-symmetry.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gui.lo c-interface-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-database.cc -fPIC -DPIC -o .libs/c-interface-database.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gtk2.lo c-interface-gtk2.cc In file included from cc-interface.hh:37, from c-interface-curlew.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gui.cc -fPIC -DPIC -o .libs/c-interface-gui.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gtk2.cc -fPIC -DPIC -o .libs/c-interface-gtk2.o In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-side-chain.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-gui.cc:65: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-build-gui.cc: In function 'void fill_move_molecule_here_dialog(GtkWidget*)': c-interface-build-gui.cc:248:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 248 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:67: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'bool renumber_residues_from_widget(GtkWidget*)': c-interface-build-gui.cc:420:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 420 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_id_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'void mutate_sequence_chain_combobox_changed(GtkWidget*, gpointer)': c-interface-build-gui.cc:914:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 914 | char *atc = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'GtkWidget* wrapped_create_fast_ss_search_dialog()': c-interface-build-gui.cc:1617:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1617 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_temp_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1618:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1618 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_noaa_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1619:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1619 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_temp_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1620:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1620 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_noaa_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1621:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1621 | gtk_combo_box_set_active(GTK_COMBO_BOX(radius_combobox),1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-gui.cc:72: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-gtk2.cc:59: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-curlew.cc:63: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-gtk2.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-info.lo c-interface-info.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-info.cc -fPIC -DPIC -o .libs/c-interface-info.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-info.cc:72: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-kk.lo c-interface-kk.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-kk.cc -fPIC -DPIC -o .libs/c-interface-kk.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-image.lo c-interface-image.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-utils.hh:26, from curl-utils.hh:36, from c-interface-gui.cc:70: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-gui.cc:78: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-gui.cc: In function 'void open_cif_dictionary_file_selector_dialog()': c-interface-gui.cc:156:65: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 156 | GtkWidget *aa_hbutton_box = gtk_dialog_get_content_area(GTK_DIALOG(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:42: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_remarks_browswer_chooser(GtkWidget*)': c-interface-gui.cc:267:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 267 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:67: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_coot_references_button(GtkWidget*)': c-interface-gui.cc:823:47: warning: 'GtkWidget* gtk_dialog_get_header_bar(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 823 | GtkWidget *hbox = gtk_dialog_get_header_bar(GTK_DIALOG(widget)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:174:13: note: declared here 174 | GtkWidget * gtk_dialog_get_header_bar (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_recentre_on_read_pdb_combobox(GtkWidget*)': c-interface-gui.cc:1194:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1194 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-image.cc -fPIC -DPIC -o .libs/c-interface-image.o c-interface-gui.cc:1196:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void store_window_size(int, GtkWidget*)': c-interface-gui.cc:1317:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1317 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_filter_button(GtkWidget*, short int)': c-interface-gui.cc:1649:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1649 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:128: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1651:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1651 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1652 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1656:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1656 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1657 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1660:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1660 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1661 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_extra_filter_button(GtkWidget*, const gchar*, const gchar*)': c-interface-gui.cc:1676:31: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1676 | gtk_file_chooser_add_filter (GTK_FILE_CHOOSER (fileselection), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1677 | GTK_FILE_FILTER (filter)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void set_refine_params_comboboxes()': c-interface-gui.cc:2115:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2115 | if (cb1) gtk_combo_box_set_active(GTK_COMBO_BOX(cb1), g.refine_params_dialog_geman_mcclure_alpha_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2116:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2116 | if (cb2) gtk_combo_box_set_active(GTK_COMBO_BOX(cb2), g.refine_params_dialog_rama_restraints_weight_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2117:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2117 | if (cb3) gtk_combo_box_set_active(GTK_COMBO_BOX(cb3), g.refine_params_dialog_lennard_jones_epsilon_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2118:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2118 | if (cb4) gtk_combo_box_set_active(GTK_COMBO_BOX(cb4), g.refine_params_dialog_torsions_weight_combox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_chiral_volume_molecule_combobox(GtkWidget*)': c-interface-gui.cc:2180:50: warning: 'GtkWidget* gtk_combo_box_new()' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2180 | GtkWidget *combobox_new = gtk_combo_box_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:74:15: note: declared here 74 | GtkWidget *gtk_combo_box_new (void); | ^~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void pepflips_by_difference_map_dialog()': c-interface-gui.cc:2205:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2205 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(model_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2206:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2206 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(map_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void show_model_toolbar_all_icons()': c-interface-gui.cc:2504:52: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 2504 | GtkTreeModel *model = gtk_tree_view_get_model(GTK_TREE_VIEW(icons_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void show_model_toolbar_main_icons()': c-interface-gui.cc:2542:50: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 2542 | GtkTreeModel *model = gtk_tree_view_get_model(GTK_TREE_VIEW(icons_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In lambda function: c-interface-gui.cc:3778:40: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3778 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_show_symmetry_window()': c-interface-gui.cc:3787:68: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3787 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:81: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_coordinates_using_widget(GtkWidget*)': c-interface-gui.cc:4165:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 4165 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_symmetry_coords_from_filechooser(GtkWidget*)': c-interface-gui.cc:4192:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 4192 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_residue_editor_select_monomer_type_dialog()': c-interface-gui.cc:4894:36: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4894 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4903:38: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4903 | gtk_combo_box_text_append_text (GTK_COMBO_BOX_TEXT(combo_box), s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4904:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4904 | gtk_combo_box_set_active(GTK_COMBO_BOX(combo_box), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-info.cc:67: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-kk.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands-gui.lo c-interface-ligands-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands-gui.cc -fPIC -DPIC -o .libs/c-interface-ligands-gui.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-ligands-gui.cc:54: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-image.cc:47: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands.lo c-interface-ligands.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands.cc -fPIC -DPIC -o .libs/c-interface-ligands.o c-interface-info.cc: In function 'PyObject* get_pointer_position_frac_py()': c-interface-info.cc:2631:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2631 | std::pair xy = g.get_pointer_position_frac(); | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands-gui.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from c-interface-gtk2.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_sort_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:101:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 101 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 102 | 0, &file_name, | ~~~~~~~~~~~~~~ 103 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:104:43: warning: 'char* gtk_tree_path_to_string(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 104 | tree_path_str = gtk_tree_path_to_string(path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:205:14: note: declared here 205 | char *gtk_tree_path_to_string (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_filter_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:143:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 143 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 144 | 0, &file_name, | ~~~~~~~~~~~~~~ 145 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:151:34: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 151 | if (gtk_tree_model_get_iter(model, iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:154:31: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 154 | gtk_list_store_remove(GTK_LIST_STORE(model), iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-ligands.cc:51: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ligands-gui.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-maps.lo c-interface-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-maps.cc -fPIC -DPIC -o .libs/c-interface-maps.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from c-interface-image.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface-image.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mmdb.lo c-interface-mmdb.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mmdb.cc -fPIC -DPIC -o .libs/c-interface-mmdb.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-maps.cc:52: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-mmdb.cc:40: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul.lo c-interface-mogul.cc In file included from cc-interface.hh:39, from c-interface-ligands.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul.cc -fPIC -DPIC -o .libs/c-interface-mogul.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-maps.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-mogul.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-mogul.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul-scripting.lo c-interface-mogul-scripting.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-image.cc: In function 'GtkWidget* get_image_widget_for_comp_id(const std::string&, int)': c-interface-image.cc:132:45: warning: 'GtkWidget* gtk_image_new_from_pixbuf(GdkPixbuf*)' is deprecated: Use 'gtk_image_new_from_paintable' instead [-Wdeprecated-declarations] 132 | r = gtk_image_new_from_pixbuf(pixbuf); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:40, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/gtkimage.h:78:12: note: declared here 78 | GtkWidget* gtk_image_new_from_pixbuf (GdkPixbuf *pixbuf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul-scripting.cc -fPIC -DPIC -o .libs/c-interface-mogul-scripting.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-maps.cc:60: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mutate.lo c-interface-mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mutate.cc -fPIC -DPIC -o .libs/c-interface-mutate.o In file included from c-interface-mogul-scripting.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-mutate.cc:49: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ncs.lo c-interface-ncs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ncs.cc -fPIC -DPIC -o .libs/c-interface-ncs.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-ncs.cc:51: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-network.lo c-interface-network.cc In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-network.cc -fPIC -DPIC -o .libs/c-interface-network.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ncs.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-mutate.cc:44: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:39, from c-interface-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-network.cc:52: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ncs.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-nucleotides.lo c-interface-nucleotides.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-nucleotides.cc -fPIC -DPIC -o .libs/c-interface-nucleotides.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'GtkCellRenderer* coot::mogul_results_add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': c-interface-mogul.cc:218:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 218 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:219:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 219 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:220:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 220 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:221:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 221 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:222:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 222 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:223:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 223 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:225:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 225 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_bonds_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:289:55: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 289 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new(8, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 | G_TYPE_INT, | ~~~~~~~~~~~ 291 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:288: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:295:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:320:37: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 320 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:321:34: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 321 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 323 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 324 | 2, m[i].counts, | ~~~~~~~~~~~~~~~ 325 | 3, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 326 | 4, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 327 | 5, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 328 | 6, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 329 | 7, m[i].z, | ~~~~~~~~~~ 330 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:346:61: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 346 | GtkTreeSelection *sel_bonds = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_bonds_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_bonds_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:362:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 362 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:286: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:368:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 368 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 369 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 370 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 371 | 2, &value, | ~~~~~~~~~~ 372 | 3, &mean, | ~~~~~~~~~ 373 | 4, &median, | ~~~~~~~~~~~ 374 | 5, &esd, | ~~~~~~~~ 375 | 6, &z, | ~~~~~~ 376 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_angles_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:427:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 427 | GtkTreeStore *tree_store_angles = gtk_tree_store_new(9, | ~~~~~~~~~~~~~~~~~~^~~ 428 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 | G_TYPE_INT, | ~~~~~~~~~~~ 430 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:434:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 434 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:463:40: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 463 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:464:37: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 464 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 466 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 467 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 468 | 3, m[i].counts, | ~~~~~~~~~~~~~~~ 469 | 4, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 470 | 5, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 471 | 6, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 472 | 7, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 473 | 8, m[i].z, | ~~~~~~~~~~ 474 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:492:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 492 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_angles_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_angles_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:507:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 507 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:515:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 515 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 516 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 517 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 518 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 519 | 3, &value, | ~~~~~~~~~~ 520 | 4, &mean, | ~~~~~~~~~ 521 | 5, &median, | ~~~~~~~~~~~ 522 | 6, &esd, | ~~~~~~~~ 523 | 7, &z, | ~~~~~~ 524 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_torsions_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:591:58: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 591 | GtkTreeStore *tree_store_torsions = gtk_tree_store_new(6, | ~~~~~~~~~~~~~~~~~~^~~ 592 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:597:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 597 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:622:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 622 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:623:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 623 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 625 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 626 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 627 | 3, atom_name_4.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 628 | 4, m[i].value, | ~~~~~~~~~~~~~~ 629 | 5, m[i].dmin, | ~~~~~~~~~~~~~ 630 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:641:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 641 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_torsions_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_torsions_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:655:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 655 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:663:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 663 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 664 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 665 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 666 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 667 | 3, &atom_id_4, | ~~~~~~~~~~~~~~ 668 | 4, &value, | ~~~~~~~~~~ 669 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from c-interface-network.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ c-interface-ncs.cc: In function 'std::vector make_ncs_maps(int, int)': c-interface-ncs.cc:954:115: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 954 | graphics_info_t::molecules[imol_model].chain_centre_and_radius(ncs_ghosts[ighst].target_chain_id); | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-nucleotides.cc:39: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa.lo c-interface-pisa.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa.cc -fPIC -DPIC -o .libs/c-interface-pisa.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-pisa.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa-gui.lo c-interface-pisa-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa-gui.cc -fPIC -DPIC -o .libs/c-interface-pisa-gui.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-preferences.lo c-interface-preferences.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-preferences.cc -fPIC -DPIC -o .libs/c-interface-preferences.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-network.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc: In function 'PyObject* curl_progress_info_py(const char*)': c-interface-network.cc:427:13: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 427 | info = CURLINFO_CONTENT_LENGTH_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info.h:137: /usr/include/aarch64-linux-gnu/curl/curl.h:2879:3: note: declared here 2879 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc:435:13: warning: 'CURLINFO_SIZE_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_SIZE_DOWNLOAD_T [-Wdeprecated-declarations] 435 | info = CURLINFO_SIZE_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/curl/curl.h:2862:3: note: declared here 2862 | CURLINFO_SIZE_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-python.lo c-interface-python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-python.cc -fPIC -DPIC -o .libs/c-interface-python.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-preferences.cc:64: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-pisa-gui.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-python.cc:40: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refine.lo c-interface-refine.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refine.cc -fPIC -DPIC -o .libs/c-interface-refine.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa.cc:32: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-pisa.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from c-interface-python.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-refine.cc:41: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-preferences.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-preferences.cc: In function 'void show_preferences()': c-interface-preferences.cc:102:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 102 | gtk_combo_box_text_append_text(combobox, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc:118:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 118 | gtk_combo_box_text_append_text(combobox, fonts[j].c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:357:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 357 | gtk_combo_box_set_active(GTK_COMBO_BOX(w), ivalue); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In lambda function: c-interface-preferences.cc:540:49: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 540 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:551:77: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 551 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&bg_colour); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:81: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-residues.lo c-interface-residues.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-residues.cc -fPIC -DPIC -o .libs/c-interface-residues.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refmac.lo c-interface-refmac.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-pisa-gui.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-pisa-gui.cc: In function 'void coot::pisa_interfaces_gui(const std::vector&)': c-interface-pisa-gui.cc:53:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 53 | gtk_tree_store_new (12, G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT, G_TYPE_INT, G_TYPE_INT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | G_TYPE_INT); | ~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:288: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:58:30: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 58 | gtk_tree_view_set_model(tv_interfaces, GTK_TREE_MODEL(tree_store_interfaces)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refmac.cc -fPIC -DPIC -o .libs/c-interface-refmac.o c-interface-pisa-gui.cc:60:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 60 | gtk_tree_store_append(tree_store_interfaces, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:61:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 61 | gtk_tree_store_set(tree_store_interfaces, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | 0, gui_info[i].imol_1, | ~~~~~~~~~~~~~~~~~~~~~~ 63 | 1, gui_info[i].imol_2, | ~~~~~~~~~~~~~~~~~~~~~~ 64 | 2, gui_info[i].chain_id_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | 3, gui_info[i].chain_id_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | 4, gui_info[i].symop.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | 5, gui_info[i].interface_area, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | 6, gui_info[i].interface_solv_en, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | 7, gui_info[i].interface_pvalue, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | 8, gui_info[i].n_h_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | 9, gui_info[i].n_salt_bridges, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | 10, gui_info[i].n_ss_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | 11, gui_info[i].n_cov_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:89:58: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 89 | GtkTreeSelection *sel = gtk_tree_view_get_selection(GTK_TREE_VIEW(treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::add_pisa_interfaces_cell_renderer(GtkTreeView*, const std::string&, int)': c-interface-pisa-gui.cc:107:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 107 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:108:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 108 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:109:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 109 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:110:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 110 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:111:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 111 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:112:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 112 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:114:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 114 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::on_pisa_interfaces_seletion_changed(GtkTreeSelection*, gpointer)': c-interface-pisa-gui.cc:135:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 135 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:286: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:142:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 142 | gtk_tree_model_get (model, &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 143 | 0, &imol_1, | ~~~~~~~~~~~ 144 | 1, &imol_2, | ~~~~~~~~~~~ 145 | 2, &chain_id_1, | ~~~~~~~~~~~~~~~ 146 | 3, &chain_id_2, | ~~~~~~~~~~~~~~~ 147 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-residues.cc:40: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-refmac.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from ../coot-utils/glyco-tree.hh:32, from c-interface-residues.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-refmac.lo simple-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-refmac.cc -fPIC -DPIC -o .libs/simple-refmac.o In file included from /usr/include/c++/13/istream:41, from /usr/include/c++/13/sstream:40, from ../validation-graphs/../geometry/residue-and-atom-specs.hh:26, from ../validation-graphs/residue-validation-information.hh:30, from ../validation-graphs/validation-information.hh:30, from graphics-info.h:32: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits]', inlined from 'void update_preference_gui()' at c-interface-preferences.cc:519:86: /usr/include/c++/13/ostream:293:25: warning: 'colour_button' may be used uninitialized [-Wmaybe-uninitialized] 293 | { return _M_insert(__p); } | ~~~~~~~~~^~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:226:14: note: 'colour_button' was declared here 226 | GtkWidget *colour_button; | ^~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-scm.lo c-interface-scm.cc In file included from cc-interface.hh:39, from c-interface-nucleotides.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from cc-interface.hh:39, from c-interface-refine.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-scm.cc -fPIC -DPIC -o .libs/c-interface-scm.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from simple-refmac.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-scm.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from cc-interface.hh:37, from c-interface-refmac.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sequence.lo c-interface-sequence.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sequence.cc -fPIC -DPIC -o .libs/c-interface-sequence.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from c-interface-residues.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-scm.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-sequence.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from simple-refmac.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ simple-refmac.cc: In function 'void wrapped_create_simple_refmac_dialog()': simple-refmac.cc:63:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 63 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox_file), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 | g.mtz_file_for_refmac.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simple-refmac.cc:65:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 65 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_file), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-sequence.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sfs.lo c-interface-sfs.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sfs.cc -fPIC -DPIC -o .libs/c-interface-sfs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sharpen.lo c-interface-sharpen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sharpen.cc -fPIC -DPIC -o .libs/c-interface-sharpen.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-superpose.lo c-interface-superpose.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-superpose.cc -fPIC -DPIC -o .libs/c-interface-superpose.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-validate.lo c-interface-validate.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-validate.cc -fPIC -DPIC -o .libs/c-interface-validate.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-view.lo c-interface-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-view.cc -fPIC -DPIC -o .libs/c-interface-view.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-superpose.cc:38: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-sharpen.cc:29: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-widgets.lo c-interface-widgets.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-widgets.cc -fPIC -DPIC -o .libs/c-interface-widgets.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-validate.cc:52: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters.lo c-interface-waters.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-view.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters.cc -fPIC -DPIC -o .libs/c-interface-waters.o In file included from c-interface-sfs.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-widgets.cc:36: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-waters.cc:51: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:37, from c-interface-view.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters-gui.lo c-interface-waters-gui.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters.cc:47: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters-gui.cc -fPIC -DPIC -o .libs/c-interface-waters-gui.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-validate.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-widgets.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-superpose.cc:46: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-waters-gui.cc:50: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-widgets.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void remarks_dialog(int)': c-interface-widgets.cc:164:42: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 164 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:42: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:169:58: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 169 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:250:37: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 250 | gtk_dialog_add_button(GTK_DIALOG(d), "Close", GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void simple_text_dialog(const std::string&, const std::string&, int, int)': c-interface-widgets.cc:625:36: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 625 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:629:52: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 629 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); // new method to get vbox fromm dialog | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:651:54: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 651 | GtkWidget *close_button = gtk_dialog_add_button(GTK_DIALOG(d), "Close", 2); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-widgets.cc:758: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface.lo c-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface.cc -fPIC -DPIC -o .libs/c-interface.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-waters.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters-gui.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface.cc:102: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface.cc:91: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-test.lo c-interface-test.cc In file included from c-interface.cc:96: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-test.cc -fPIC -DPIC -o .libs/c-interface-test.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-alignment.lo cc-interface-alignment.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-graphics.lo cc-interface-graphics.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-alignment.cc -fPIC -DPIC -o .libs/cc-interface-alignment.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-graphics.cc -fPIC -DPIC -o .libs/cc-interface-graphics.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-merge.lo cc-interface-merge.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-merge.cc -fPIC -DPIC -o .libs/cc-interface-merge.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-merge.cc:38: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-validate.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-validate.cc: In function 'GtkWidget* wrapped_create_check_waters_dialog()': c-interface-validate.cc:136:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_set_active(GTK_COMBO_BOX(check_waters_action_combobox), 0); // "Check" | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc:143:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 143 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:67: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc: In function 'void do_check_waters_by_widget(GtkWidget*)': c-interface-validate.cc:294:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 294 | gchar *at = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(action_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-alignment.cc:41: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from c-interface-test.cc:102: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-graphics.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void mono_mode()': c-interface.cc:1175:53: warning: 'int gtk_widget_get_allocated_width(GtkWidget*)' is deprecated: Use 'gtk_widget_get_width' instead [-Wdeprecated-declarations] 1175 | int x_size = gtk_widget_get_allocated_width(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:472:23: note: declared here 472 | int gtk_widget_get_allocated_width (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:1176:54: warning: 'int gtk_widget_get_allocated_height(GtkWidget*)' is deprecated: Use 'gtk_widget_get_height' instead [-Wdeprecated-declarations] 1176 | int y_size = gtk_widget_get_allocated_height(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:474:23: note: declared here 474 | int gtk_widget_get_allocated_height (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray(const char*)': c-interface.cc:4517:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4517 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray_py(const char*)': c-interface.cc:4541:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4541 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void sequence_view(int)': c-interface.cc:7668:57: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 7668 | GtkStyleContext *sc = gtk_widget_get_style_context(button); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:7669:34: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 7669 | gtk_style_context_add_class(sc, "circular"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:263: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-representation.lo cc-interface-molecular-representation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-representation.cc -fPIC -DPIC -o .libs/cc-interface-molecular-representation.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-molecular-representation.cc:37: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:37, from cc-interface-graphics.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-symmetry.lo cc-interface-molecular-symmetry.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-symmetry.cc -fPIC -DPIC -o .libs/cc-interface-molecular-symmetry.o In file included from cc-interface.hh:39, from cc-interface-merge.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-test.cc:89: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface-test.cc:94: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-molecular-symmetry.cc:37: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-scripting.lo cc-interface-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-scripting.cc -fPIC -DPIC -o .libs/cc-interface-scripting.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-molecular-representation.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-scripting.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from cc-interface.hh:37, from cc-interface-molecular-symmetry.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-map-utils.lo cc-interface-map-utils.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-map-utils.cc -fPIC -DPIC -o .libs/cc-interface-map-utils.o In file included from c-interface-test.cc:438: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-alignment.cc:43: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-map-utils.cc:30: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-png.lo cc-interface-png.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-png.cc -fPIC -DPIC -o .libs/cc-interface-png.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-test.cc: In function 'PyObject* test_function_py(PyObject*, PyObject*)': c-interface-test.cc:1569:31: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1569 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-user-defined-atom-colours.lo cc-interface-user-defined-atom-colours.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-png.cc:55: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-user-defined-atom-colours.cc -fPIC -DPIC -o .libs/cc-interface-user-defined-atom-colours.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cfc.lo cfc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cfc.cc -fPIC -DPIC -o .libs/cfc.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface-png.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o change-dir.lo change-dir.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c change-dir.cc -fPIC -DPIC -o .libs/change-dir.o In file included from change-dir.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cc-interface-user-defined-atom-colours.cc:29: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cmtz-interface.cc -fPIC -DPIC -o .libs/cmtz-interface.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cfc.cc:45: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from cmtz-interface.cc:58: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line.lo command-line.cc In file included from cc-interface.hh:39, from cc-interface-map-utils.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line.cc -fPIC -DPIC -o .libs/command-line.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line-extern.lo command-line-extern.cc In file included from cc-interface.hh:37, from cc-interface-user-defined-atom-colours.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line-extern.cc -fPIC -DPIC -o .libs/command-line-extern.o In file included from cmtz-interface.cc:53: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-application.lo coot-application.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-application.cc -fPIC -DPIC -o .libs/coot-application.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from command-line.cc:61: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from cc-interface.hh:37, from cfc.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from command-line-extern.cc:41: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from coot-application.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cmtz-interface.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc: In function 'void my_combo_box_text_add_items(GtkComboBox*, const std::vector&, int)': cmtz-interface.cc:541:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 541 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:545:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 545 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:546:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 546 | gtk_list_store_set(store, &iter, 0, col_lab.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:553:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 553 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:554:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 554 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:67: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:556:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 556 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:559:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 559 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_label_index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from cc-interface-user-defined-atom-colours.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cfc-widgets.hh:28, from cfc.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-colour.lo coot-colour.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-align.lo coot-align.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-align.cc -fPIC -DPIC -o .libs/coot-align.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from cc-interface-png.cc:53: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-application.cc: In function 'int start_using_application(int, char**)': coot-application.cc:103:69: warning: 'G_APPLICATION_FLAGS_NONE' is deprecated: Use 'G_APPLICATION_DEFAULT_FLAGS' instead [-Wdeprecated-declarations] 103 | GtkApplication *app = gtk_application_new ("org.emsley.coot", G_APPLICATION_FLAGS_NONE); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gio/giotypes.h:30, from /usr/include/glib-2.0/gio/gio.h:28, from /usr/include/gtk-4.0/gtk/css/gtkcsssection.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:36, from /usr/include/gtk-4.0/gtk/gtk.h:29: /usr/include/glib-2.0/gio/gioenums.h:1540:3: note: declared here 1540 | G_APPLICATION_FLAGS_NONE GIO_DEPRECATED_ENUMERATOR_IN_2_74_FOR(G_APPLICATION_DEFAULT_FLAGS), | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-nomenclature.lo coot-nomenclature.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-nomenclature.cc -fPIC -DPIC -o .libs/coot-nomenclature.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o coot-glue-gtk2.lo coot-glue-gtk2.c In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c coot-glue-gtk2.c -fPIC -DPIC -o .libs/coot-glue-gtk2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-glue-gtk2-python.lo coot-glue-gtk2-python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-glue-gtk2-python.cc -fPIC -DPIC -o .libs/coot-glue-gtk2-python.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-hydrogens.lo coot-hydrogens.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-hydrogens.cc -fPIC -DPIC -o .libs/coot-hydrogens.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-align.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from command-line.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from command-line.cc:68: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-phi-psi.lo coot-phi-psi.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_pythonmodule.lo coot_pythonmodule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-phi-psi.cc -fPIC -DPIC -o .libs/coot-phi-psi.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_pythonmodule.cc -fPIC -DPIC -o .libs/coot_pythonmodule.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-setup-python.lo coot-setup-python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-setup-python.cc -fPIC -DPIC -o .libs/coot-setup-python.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from command-line-extern.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../ideal/simple-restraint.hh:162, from coot-nomenclature.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from coot_pythonmodule.cc:123: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | swig -o coot_wrap_guile_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_LIBCURL -I../src -I.. -guile -c++ ../src/coot.i In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-hydrogens.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o curlew-gtk4.lo curlew-gtk4.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from coot-setup-python.cc:41: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c curlew-gtk4.cc -fPIC -DPIC -o .libs/curlew-gtk4.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw.lo draw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw.cc -fPIC -DPIC -o .libs/draw.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-tick-function.lo graphics-info-tick-function.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from draw.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-tick-function.cc -fPIC -DPIC -o .libs/graphics-info-tick-function.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from curlew-gtk4.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o drag-and-drop.lo drag-and-drop.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c drag-and-drop.cc -fPIC -DPIC -o .libs/drag-and-drop.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw-generic-display-objects.lo draw-generic-display-objects.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-tick-function.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dynamic-validation.lo dynamic-validation.cc In file included from cc-interface.hh:37, from coot-setup-python.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw-generic-display-objects.cc -fPIC -DPIC -o .libs/draw-generic-display-objects.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dynamic-validation.cc -fPIC -DPIC -o .libs/dynamic-validation.o In file included from cc-interface.hh:37, from drag-and-drop.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from draw-generic-display-objects.cc:38: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from dynamic-validation.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o eyes.lo eyes.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c eyes.cc -fPIC -DPIC -o .libs/eyes.o In file included from curlew-gtk4.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot_pythonmodule.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from draw-generic-display-objects.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-tick-function.cc:38: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o event-controller-callbacks.lo event-controller-callbacks.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c event-controller-callbacks.cc -fPIC -DPIC -o .libs/event-controller-callbacks.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fit-loop-gui.lo fit-loop-gui.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fit-loop-gui.cc -fPIC -DPIC -o .libs/fit-loop-gui.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev.lo flev.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev.cc -fPIC -DPIC -o .libs/flev.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from flev.cc:41: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from event-controller-callbacks.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from curlew-gtk4.hh:29, from curlew-gtk4.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from fit-loop-gui.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot-setup-python.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-setup-python.cc: In function 'void setup_python_basic(int, char**)': coot-setup-python.cc:71:17: warning: 'void PySys_SetArgv(int, wchar_t**)' is deprecated [-Wdeprecated-declarations] 71 | PySys_SetArgv(argc, _argv); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/python3.11/Python.h:96, from coot-setup-python.cc:24: /usr/include/python3.11/sysmodule.h:13:38: note: declared here 13 | Py_DEPRECATED(3.11) PyAPI_FUNC(void) PySys_SetArgv(int, wchar_t **); | ^~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o framebuffer.lo framebuffer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c framebuffer.cc -fPIC -DPIC -o .libs/framebuffer.o In file included from probe-clash-score.hh:32, from ligand-check.hh:30, from c-interface-ligands.hh:34, from flev.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-ligands.hh:35: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from flev.cc:39: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from event-controller-callbacks.hh:29, from event-controller-callbacks.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In lambda function: event-controller-callbacks.cc:166:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 166 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk4(GtkWidget*, double, double)': event-controller-callbacks.cc:475:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 475 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk3(GtkWidget*, double, double)': event-controller-callbacks.cc:549:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 549 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::on_glarea_motion(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': event-controller-callbacks.cc:800:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 800 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ draw-generic-display-objects.cc: In static member function 'static void graphics_info_t::draw_generic_objects(unsigned int)': draw-generic-display-objects.cc:209:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 209 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o old-generic-display-object.lo old-generic-display-object.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c old-generic-display-object.cc -fPIC -DPIC -o .libs/old-generic-display-object.o In file included from cc-interface.hh:39, from flev.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from old-generic-display-object.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from gaussian-surface.cc:29: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generic-objects.lo generic-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c generic-objects.cc -fPIC -DPIC -o .libs/generic-objects.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:37, from gaussian-surface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from generic-objects.cc:50: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geometry-graphs.lo geometry-graphs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geometry-graphs.cc -fPIC -DPIC -o .libs/geometry-graphs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-monomer.lo get-monomer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-monomer.cc -fPIC -DPIC -o .libs/get-monomer.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from fit-loop-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ fit-loop-gui.cc: In function 'void fit_loop_using_dialog()': fit-loop-gui.cc:184:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 184 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_combobox_text)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from generic-objects.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from get-residue.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from get-monomer.cc:29: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from get-monomer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from generic-objects.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-rama-plot.lo gl-rama-plot.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globjects.lo globjects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-rama-plot.cc -fPIC -DPIC -o .libs/gl-rama-plot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globjects.cc -fPIC -DPIC -o .libs/globjects.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globularize.lo globularize.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globularize.cc -fPIC -DPIC -o .libs/globularize.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info.lo graphics-info.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info.cc -fPIC -DPIC -o .libs/graphics-info.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from globularize.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info.cc:72: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines.lo graphics-info-defines.cc In file included from gl-rama-plot.cc:329: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ gl-rama-plot.cc: In member function 'std::pair, glm::vec<2, float, glm::packed_highp> > gl_rama_plot_t::get_munged_offset_and_scale(screen_position_origins_t, const glm::vec2&, float, float, int, int) const': gl-rama-plot.cc:418:82: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 418 | int glarea_width, int glarea_height) const { | ^~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines.cc -fPIC -DPIC -o .libs/graphics-info-defines.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-defines.cc:36: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines-gtk4.lo graphics-info-defines-gtk4.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines-gtk4.cc -fPIC -DPIC -o .libs/graphics-info-defines-gtk4.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw.lo graphics-info-draw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw.cc -fPIC -DPIC -o .libs/graphics-info-draw.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-defines-gtk4.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw-models.lo graphics-info-draw-models.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw-models.cc -fPIC -DPIC -o .libs/graphics-info-draw-models.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-graphs.lo graphics-info-graphs.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-graphs.cc -fPIC -DPIC -o .libs/graphics-info-graphs.o In file included from cc-interface.hh:39, from graphics-info.cc:97: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from get-monomer.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-draw.cc:48: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-draw-models.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-gui.lo graphics-info-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-gui.cc -fPIC -DPIC -o .libs/graphics-info-gui.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-gui.cc:71: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-graphs.cc:60: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-gui.cc:63: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-graphs.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-init.lo graphics-info-init.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-init.cc -fPIC -DPIC -o .libs/graphics-info-init.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-gui.cc:42: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::show_refinement_and_regularization_parameters_frame()': graphics-info-gui.cc:136:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(overall_weight_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:142:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 142 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(overall_weight_combobox), t.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:144:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 144 | gtk_combo_box_set_active(GTK_COMBO_BOX(overall_weight_combobox), 4); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::add_status_bar_text(const std::string&)': graphics-info-gui.cc:332:28: warning: 'guint gtk_statusbar_push(GtkStatusbar*, guint, const char*)' is deprecated [-Wdeprecated-declarations] 332 | gtk_statusbar_push(GTK_STATUSBAR(statusbar), statusbar_context_id, sbt.c_str()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:259: /usr/include/gtk-4.0/gtk/deprecated/gtkstatusbar.h:50:12: note: declared here 50 | guint gtk_statusbar_push (GtkStatusbar *statusbar, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:355:49: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 355 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:128: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_for_saving_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:374:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 374 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::set_file_for_save_filechooser(GtkWidget*) const': graphics-info-gui.cc:462:35: warning: 'gboolean gtk_file_chooser_set_file(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 462 | gtk_file_chooser_set_file(GTK_FILE_CHOOSER(filechooser), file, &error); // deprecated | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:121:22: note: declared here 121 | gboolean gtk_file_chooser_set_file (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:474:43: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 474 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(filechooser), stripped_name.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'GtkWidget* graphics_info_t::dialog_box_of_buttons_internal(const std::string&, const std::vector, std::allocator >, void (*)(), void*> >&, const std::string&)': graphics-info-gui.cc:662:38: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 662 | GtkWidget *dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:42: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ graphics-info-gui.cc:666:55: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 666 | GtkWidget *vbox_outer = gtk_dialog_get_content_area(GTK_DIALOG(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:692:25: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 692 | gtk_dialog_add_button(GTK_DIALOG(dialog), close_button_label.c_str(), GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::new_fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1776:51: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1776 | GtkTreeModel *model_1 = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1782:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1782 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1786:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1786 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:67: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1793:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1793 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1794:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1794 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1798:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1798 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1799:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1799 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox_molecule), renderer, true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1800:34: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1800 | gtk_cell_layout_set_attributes(GTK_CELL_LAYOUT(combobox_molecule), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1801:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1801 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox_molecule), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1810:34: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1810 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_molecule), imol_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1811:96: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1811 | std::cout << "!!!!!!!!!!! combobox get_active() returns " << gtk_combo_box_get_active(GTK_COMBO_BOX(combobox_molecule)) << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_molecule_options(GtkWidget*, GCallback, int, const std::vector&)': graphics-info-gui.cc:1833:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1833 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1835:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1835 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1855:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1855 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1856:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1856 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1865:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1865 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1866:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1866 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1867:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1867 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1868:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1868 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1872:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1872 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1900:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1900 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1921:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1921 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1922:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1922 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1934:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1934 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1935:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1935 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1936:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1936 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1937:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1937 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1943:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1943 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_undo_options(GtkWidget*)': graphics-info-gui.cc:2190:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2190 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3099:50: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3099 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^ graphics-info-gui.cc: In static member function 'static void graphics_info_t::fill_bond_parameters_internals(GtkWidget*, int)': graphics-info-gui.cc:3650:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3650 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3666:32: warning: 'void gtk_combo_box_text_append(GtkComboBoxText*, const char*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3666 | gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(bond_width_combobox), nullptr, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:65:15: note: declared here 65 | void gtk_combo_box_text_append (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3671:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3671 | gtk_combo_box_set_active(GTK_COMBO_BOX(bond_width_combobox), idx_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::bond_parameters_bond_width_combobox_changed(GtkWidget*, gpointer)': graphics-info-gui.cc:3745:37: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3745 | int id = gtk_combo_box_get_active(GTK_COMBO_BOX(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_comboboxtext(GtkComboBoxText*)': graphics-info-gui.cc:3954:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3954 | gchar *at = gtk_combo_box_text_get_active_text(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_combobox(GtkComboBox*) const': graphics-info-gui.cc:3965:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3965 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3967:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3967 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3971:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 3971 | gtk_tree_model_get_value(model, &iter, 0, &f_label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static std::string graphics_info_t::fill_combobox_with_chain_options(GtkWidget*, int, GCallback, const std::string&)': graphics-info-gui.cc:4013:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4013 | gtk_combo_box_text_remove_all(cb_as_text); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4020:40: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4020 | gtk_combo_box_text_append_text(cb_as_text, ch_id.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4022:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4022 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_text), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4507:46: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4507 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~ graphics-info-gui.cc:4514:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4514 | gtk_widget_get_allocation(glarea, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-intermediate.lo graphics-info-intermediate.cc In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-intermediate.cc -fPIC -DPIC -o .libs/graphics-info-intermediate.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-init.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-modelling.lo graphics-info-modelling.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-modelling.cc -fPIC -DPIC -o .libs/graphics-info-modelling.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info-graphs.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-modelling.cc:80: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../coot-utils/coot-map-utils.hh:33, from graphics-info-graphs.cc:83: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:97:60: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_validation_graph_model_list()': graphics-info-graphs.cc:93:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 93 | gtk_tree_model_foreach( | ~~~~~~~~~~~~~~~~~~~~~~^ 94 | GTK_TREE_MODEL(validation_graph_model_list), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 | +[](GtkTreeModel* model, GtkTreePath* path, GtkTreeIter* iter, gpointer data) -> gboolean { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | GtkListStore* list = GTK_LIST_STORE(model); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 | }, | ~~ 99 | NULL | ~~~~ 100 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:373:19: note: declared here 373 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:107:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 107 | gtk_list_store_append(validation_graph_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:108:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 108 | gtk_list_store_set(validation_graph_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:166:45: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 166 | return gboolean(!gtk_list_store_remove(list,iter)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_ramachandran_plot_model_list()': graphics-info-graphs.cc:169:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 169 | gtk_tree_model_foreach(GTK_TREE_MODEL(ramachandran_plot_model_list), fn, NULL); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:373:19: note: declared here 373 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:176:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 176 | gtk_list_store_append(ramachandran_plot_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:177:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 177 | gtk_list_store_set(ramachandran_plot_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3099:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3099 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4507:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4507 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-intermediate.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-modelling.cc:65: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3099:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3099 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-init.cc: In member function 'void graphics_info_t::init()': graphics-info-init.cc:485:55: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 485 | validation_graph_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-init.cc:488:56: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 488 | ramachandran_plot_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4507:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4507 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-draw.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info-draw.cc: In static member function 'static glm::mat4 graphics_info_t::get_molecule_mvp(bool)': graphics-info-draw.cc:632:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 632 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float)': graphics-info-draw.cc:722:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 722 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_intermediate_atoms(unsigned int)': graphics-info-draw.cc:1041:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1041 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:1651:107: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1651 | return std::pair(offset_rel, scales_new); | ^ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1664:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1664 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_colour_bar()': graphics-info-draw.cc:1698:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1698 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_models_for_ssao()': graphics-info-draw-models.cc:37:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 37 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_molecules_for_ssao()': graphics-info-draw-models.cc:58:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 58 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_meshed_generic_display_object_meshes(unsigned int)': graphics-info-draw.cc:2209:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2209 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_molecules_other_meshes(unsigned int)': graphics-info-draw.cc:2367:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2367 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::setup_hud_geometry_bars()': graphics-info-draw.cc:3007:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3007 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_buttons()': graphics-info-draw.cc:3227:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3227 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ramachandran_plot()': graphics-info-draw.cc:3291:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3291 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:3332:67: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3332 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::show_accept_reject_hud_buttons()': graphics-info-draw.cc:3504:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3504 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::reset_hud_buttons_size_and_position()': graphics-info-draw.cc:3616:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3616 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static float graphics_info_t::get_x_base_for_hud_geometry_bars()': graphics-info-draw.cc:3632:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3632 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_bars()': graphics-info-draw.cc:3657:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3657 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'std::pair graphics_info_t::check_if_hud_bar_moused_over_or_act_on_hud_bar_clicked(double, double, bool)': graphics-info-draw.cc:3995:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3995 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'bool graphics_info_t::check_if_hud_button_moused_over_or_act_on_hit(double, double, bool, bool)': graphics-info-draw.cc:4326:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4326 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_tooltip()': graphics-info-draw.cc:4407:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4407 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info-draw.cc:4422: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:4599:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4599 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_bad_nbc_atom_pair_markers(unsigned int)': graphics-info-draw.cc:5468:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5468 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_chiral_volume_outlier_markers(unsigned int)': graphics-info-draw.cc:5518:48: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5518 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ligand_view()': graphics-info-draw.cc:5711:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5711 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-modelling.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_extra_distance_restraints(int)': graphics-info-draw.cc:6151:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 6151 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc: In static member function 'static void graphics_info_t::move_molecule_here_combobox_changed(GtkWidget*, gpointer)': graphics-info-modelling.cc:5590:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5590 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5592:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5592 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5594:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 5594 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation.lo graphics-info-navigation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation.cc -fPIC -DPIC -o .libs/graphics-info-navigation.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-navigation.cc:61: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation-gtk2.lo graphics-info-navigation-gtk2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation-gtk2.cc -fPIC -DPIC -o .libs/graphics-info-navigation-gtk2.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-navigation-gtk2.cc:42: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-navigation.cc:54: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-preferences.lo graphics-info-preferences.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-preferences.cc -fPIC -DPIC -o .libs/graphics-info-preferences.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-network.lo graphics-info-network.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-network.cc -fPIC -DPIC -o .libs/graphics-info-network.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-preferences.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1672:105: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1672 | auto p_s = get_munged_offset_and_scale(HUDTextureMesh::TOP_RIGHT, position_natural, 1.0, 1.0, w, h); | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-navigation.cc:63: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_new_mol()': graphics-info-navigation.cc:825:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 825 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:67: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_other_molecule_chosen(int)': graphics-info-navigation.cc:874:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 874 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In static member function 'static void graphics_info_t::go_to_atom_mol_combobox_changed(GtkWidget*, gpointer)': graphics-info-navigation.cc:949:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 949 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:951:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 951 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:953:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 953 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'int graphics_info_t::combobox_get_imol(GtkComboBox*) const': graphics-info-navigation.cc:982:53: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 982 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:984:55: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 984 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:989:37: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-network.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation-gtk2.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:177:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2644:57: note: in definition of macro '_G_TYPE_CIC' 2644 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:177:67: note: in expansion of macro 'GTK_TREE_VIEW' 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:195:56: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2644:57: note: in definition of macro '_G_TYPE_CIC' 2644 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:195:25: note: in expansion of macro 'GTK_TREE_VIEW' 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_window_residue_and_atom_lists_gtk4()': graphics-info-navigation-gtk2.cc:228:43: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2644:57: note: in definition of macro '_G_TYPE_CIC' 2644 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:228:12: note: in expansion of macro 'GTK_TREE_VIEW' 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:230:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 230 | GtkTreeModel *model = gtk_tree_view_get_model(tv); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:234:27: warning: 'void gtk_tree_store_clear(GtkTreeStore*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 234 | gtk_tree_store_clear(GTK_TREE_STORE(model)); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:288: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:142:15: note: declared here 142 | void gtk_tree_store_clear (GtkTreeStore *tree_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:254:50: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 254 | GtkTreeStore *tree_store = gtk_tree_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:258:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 258 | gtk_tree_view_set_model(GTK_TREE_VIEW(gtktree), GTK_TREE_MODEL(tree_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:261:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 261 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:265:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 265 | gtk_tree_store_set (tree_store, &toplevel, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 266 | CHAIN_COL, residue_chains[ichain].chain_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 | RESIDUE_COL, NULL, | ~~~~~~~~~~~~~~~~~~ 268 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:275:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 275 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &child, &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:280:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 280 | gtk_tree_store_set(tree_store, &child, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 281 | CHAIN_COL, lab.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 282 | RESIDUE_COL, res_spec_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:288:66: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 288 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:290:76: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 290 | GtkTreeViewColumn *column = gtk_tree_view_column_new_with_attributes ("Chains", cell_renderer, "markup", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:293:34: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 293 | gtk_tree_view_append_column(GTK_TREE_VIEW (tv), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:295:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (tv); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:296:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 296 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:286: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:300:45: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 300 | gtk_tree_selection_set_select_function(tree_sel, residue_tree_selection_func, NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:307:52: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 307 | GtkTreeModel *model = gtk_tree_view_get_model(GTK_TREE_VIEW(atom_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:310:30: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 310 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:332:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2644:57: note: in definition of macro '_G_TYPE_CIC' 2644 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:332:67: note: in expansion of macro 'GTK_TREE_VIEW' 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::residue_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:420:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 420 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:422:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 422 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:432:35: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 432 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::residue_tree_residue_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:487:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 487 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:490:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 490 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:492:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 492 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:499:32: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 499 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_atom_list_gtk2(GtkWidget*, int, char*, int, char*)': graphics-info-navigation-gtk2.cc:581:50: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2644:57: note: in definition of macro '_G_TYPE_CIC' 2644 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:581:19: note: in expansion of macro 'GTK_TREE_VIEW' 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:594:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 594 | GtkTreeModel *model = gtk_tree_view_get_model(atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:596:39: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 596 | list_store = gtk_list_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:600:27: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 600 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:605:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 605 | gtk_tree_view_set_model(GTK_TREE_VIEW(atom_tree), GTK_TREE_MODEL(list_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:609:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 609 | gtk_list_store_append(GTK_LIST_STORE(list_store), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:610:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 610 | gtk_list_store_set(GTK_LIST_STORE(list_store), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 | CHAIN_COL, atoms[iatom].button_label.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 | RESIDUE_COL, (gpointer) atoms[iatom].atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:617:57: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 617 | GtkCellRenderer *cell = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:619:51: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 619 | gtk_tree_view_column_new_with_attributes ("Atoms", cell, "text", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:620:35: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 620 | gtk_tree_view_append_column (GTK_TREE_VIEW (atom_tree), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:622:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 622 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:623:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 623 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:626:46: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 626 | gtk_tree_selection_set_select_function (tree_sel, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 627 | graphics_info_t::atom_tree_selection_func, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 | NULL, NULL); | ~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::atom_tree_atom_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:642:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 642 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:645:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 645 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:647:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:654:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 654 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::atom_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:688:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 688 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:690:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 690 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:697:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 697 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-preferences.cc:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-preferences.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::preferences_toolbar_icon_toggled(GtkCellRendererToggle*, gchar*, gpointer, int)': graphics-info-preferences.cc:711:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 711 | GtkTreePath *path = gtk_tree_path_new_from_string (path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:197:14: note: declared here 197 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:715:26: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 715 | gtk_tree_model_get_iter(model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:716:21: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 716 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 717 | 0, &value, | ~~~~~~~~~~ 718 | 3, &icon_pos, -1); | ~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:721:22: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 721 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, value, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:729:22: warning: 'void gtk_tree_path_free(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 729 | gtk_tree_path_free (path); | ~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:224:14: note: declared here 224 | void gtk_tree_path_free (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In member function 'void graphics_info_t::fill_preferences_toolbar_icons(GtkWidget*, GtkWidget*, int)': graphics-info-preferences.cc:774:45: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 774 | GtkWidget *icons_tree = gtk_tree_view_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:775:37: warning: 'void gtk_tree_view_set_headers_visible(GtkTreeView*, gboolean)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 775 | gtk_tree_view_set_headers_visible(GTK_TREE_VIEW(icons_tree), FALSE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:209:24: note: declared here 209 | void gtk_tree_view_set_headers_visible (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-preferences.cc:789:59: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 789 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gtype.h:2644:57: note: in definition of macro '_G_TYPE_CIC' 2644 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:30:41: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 30 | #define GTK_TREE_MODEL(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_MODEL, GtkTreeModel)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:789:26: note: in expansion of macro 'GTK_TREE_MODEL' 789 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:799:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 799 | gtk_tree_view_set_model(GTK_TREE_VIEW(icons_tree), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:801:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 801 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:802:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 802 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:803:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 803 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:808:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 808 | gtk_list_store_append(GTK_LIST_STORE(model), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:856:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 856 | gtk_list_store_set(GTK_LIST_STORE(model), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 | BUTTON_COL, "", | ~~~~~~~~~~~~~~~ 858 | ICON_COL, icon, | ~~~~~~~~~~~~~~~ 859 | TEXT_COL, item.icon_text.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | INDEX_COL, item.icon_pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:865:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 865 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:866:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 866 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), button_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:867:50: warning: 'GtkCellRenderer* gtk_cell_renderer_toggle_new()' is deprecated [-Wdeprecated-declarations] 867 | button_renderer = gtk_cell_renderer_toggle_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:76: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertoggle.h:40:18: note: declared here 40 | GtkCellRenderer *gtk_cell_renderer_toggle_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:868:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 868 | gtk_tree_view_column_pack_start(button_col, GTK_CELL_RENDERER(button_renderer), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:870:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 870 | gtk_tree_view_column_set_attributes(button_col, button_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 | "active", BUTTON_COL, | ~~~~~~~~~~~~~~~~~~~~~ 872 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:884:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 884 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:885:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 885 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), icon_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:886:48: warning: 'GtkCellRenderer* gtk_cell_renderer_pixbuf_new()' is deprecated [-Wdeprecated-declarations] 886 | icon_renderer = gtk_cell_renderer_pixbuf_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:71: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendererpixbuf.h:39:18: note: declared here 39 | GtkCellRenderer *gtk_cell_renderer_pixbuf_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:887:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 887 | gtk_tree_view_column_pack_start(icon_col, icon_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:888:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 888 | gtk_tree_view_column_set_attributes(icon_col, icon_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 889 | "pixbuf", ICON_COL, | ~~~~~~~~~~~~~~~~~~~ 890 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:893:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 893 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:894:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 894 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), text_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:895:46: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 895 | text_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:896:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 896 | gtk_tree_view_column_pack_start(text_col, text_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:897:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 897 | gtk_tree_view_column_set_attributes(text_col, text_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 898 | "text", TEXT_COL, | ~~~~~~~~~~~~~~~~~ 899 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::update_toolbar_icons(GtkTreeModel*, int)': graphics-info-preferences.cc:986:36: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 986 | if (gtk_tree_model_get_iter_first(model, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:988:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 988 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 989 | 0, &button_value, | ~~~~~~~~~~~~~~~~~ 990 | 3, &col_index, -1); | ~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:996:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 996 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 1, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:999:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 999 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 0, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1002:38: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1002 | } while (gtk_tree_model_iter_next(model, &iter)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-mutate.lo graphics-info-mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-mutate.cc -fPIC -DPIC -o .libs/graphics-info-mutate.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-lsq.lo graphics-info-lsq.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-lsq.cc -fPIC -DPIC -o .libs/graphics-info-lsq.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-opengl.lo graphics-info-opengl.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-opengl.cc -fPIC -DPIC -o .libs/graphics-info-opengl.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-opengl.cc:38: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-mutate.cc:61: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-lsq.cc:51: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-pick.lo graphics-info-pick.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-pick.cc -fPIC -DPIC -o .libs/graphics-info-pick.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-mutate.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-pick.cc:42: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refmac.lo graphics-info-refmac.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render.lo graphics-info-render.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render.cc -fPIC -DPIC -o .libs/graphics-info-render.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refmac.cc -fPIC -DPIC -o .libs/graphics-info-refmac.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render-scene.lo graphics-info-render-scene.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render-scene.cc -fPIC -DPIC -o .libs/graphics-info-render-scene.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-opengl.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float, float, float)': graphics-info-opengl.cc:350:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 350 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-pick.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-mutate.cc:58: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-lsq.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-render.cc:38: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-refmac.cc:79: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-render-scene.cc:40: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-info-render-scene.cc:27: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-pick.cc:56: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-refmac.cc:71: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-lsq.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-render.cc:1203: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-render-scene.cc:36: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-residues.lo graphics-info-residues.cc graphics-info-render-scene.cc: In lambda function: graphics-info-render-scene.cc:731:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 731 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 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-DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-residues.cc -fPIC -DPIC -o .libs/graphics-info-residues.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-scripting.cc -fPIC -DPIC -o .libs/graphics-info-scripting.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-residues.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-scripting.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-refine.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo 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-DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-state.lo graphics-info-state.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-state.cc -fPIC -DPIC -o .libs/graphics-info-state.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-refmac.cc:50: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-state.cc:37: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-statics.lo graphics-info-statics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-statics.cc -fPIC -DPIC -o .libs/graphics-info-statics.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-statics.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-superpose.lo graphics-info-superpose.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-scripting.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-superpose.cc -fPIC -DPIC -o .libs/graphics-info-superpose.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-trackball.lo graphics-info-trackball.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-view.lo graphics-ligand-view.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-view.cc -fPIC -DPIC -o .libs/graphics-ligand-view.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-superpose.cc:33: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-trackball.cc -fPIC -DPIC -o .libs/graphics-info-trackball.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-view.hh:21, from graphics-ligand-view.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-state.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-state.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-info-trackball.cc:57: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from meshed-generic-display-object.hh:30, from coot-render.hh:40, from graphics-ligand-view.hh:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-mesh-molecule.lo graphics-ligand-mesh-molecule.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-mesh-molecule.cc -fPIC -DPIC -o .libs/graphics-ligand-mesh-molecule.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-matrix.lo gl-matrix.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-matrix.cc -fPIC -DPIC -o .libs/gl-matrix.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from graphics-ligand-mesh-molecule.cc:36: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from graphics-info-statics.cc:28: /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': graphics-info-statics.cc:292:84: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtkglarea-rama-plot.lo gtkglarea-rama-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtkglarea-rama-plot.cc -fPIC -DPIC -o .libs/gtkglarea-rama-plot.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from gtkglarea-rama-plot.cc:23: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-manual.lo gtk-manual.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-manual.cc -fPIC -DPIC -o .libs/gtk-manual.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from gtk-manual.cc:46: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-ligand-view.cc: In member function 'void graphics_ligand_bond::gl_bond_double_aromatic_bond(const lig_build::pos_t&, const lig_build::pos_t&, bool, bool)': graphics-ligand-view.cc:278:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 278 | make_double_aromatic_short_stick(pos_1, pos_2, shorten_first, shorten_second); | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-widget-conversion-utils.lo gtk-widget-conversion-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-widget-conversion-utils.cc -fPIC -DPIC -o .libs/gtk-widget-conversion-utils.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In function 'void gtkgl_rama_on_glarea_render(GtkWidget*)': gtkglarea-rama-plot.cc:94:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 94 | gtk_widget_get_allocation(GTK_WIDGET(gtk_gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In lambda function: gtkglarea-rama-plot.cc:130:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 130 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In static member function 'static void graphics_info_t::draw_rama_plots()': gtkglarea-rama-plot.cc:354:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 354 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from gtk-manual.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from gtk-widget-conversion-utils.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-utils.lo gtk-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-utils.cc -fPIC -DPIC -o .libs/gtk-utils.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from ../src/graphics-info.h:53, from gtk-utils.cc:26: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDMesh.lo HUDMesh.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDTextureMesh.lo HUDTextureMesh.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Instanced-Markup-Mesh.lo Instanced-Markup-Mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDMesh.cc -fPIC -DPIC -o .libs/HUDMesh.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Instanced-Markup-Mesh.cc -fPIC -DPIC -o .libs/Instanced-Markup-Mesh.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDTextureMesh.cc -fPIC -DPIC -o .libs/HUDTextureMesh.o In file included from Instanced-Markup-Mesh.cc:242: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../src/command-arg.hh:33, from ../src/graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init-from-gtkbuilder.lo init-from-gtkbuilder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init-from-gtkbuilder.cc -fPIC -DPIC -o .libs/init-from-gtkbuilder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o key-bindings.lo key-bindings.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LinesMesh.lo LinesMesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c key-bindings.cc -fPIC -DPIC -o .libs/key-bindings.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LinesMesh.cc -fPIC -DPIC -o .libs/LinesMesh.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../src/molecule-class-info.h:127, from ../src/graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../src/graphics-ligand-mesh-molecule.hh:30, from ../src/graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /usr/include/python3.11/Python.h:95, from key-bindings.cc:28: key-bindings.cc: In member function 'gboolean key_bindings_t::run() const': /usr/include/python3.11/ceval.h:34:34: warning: 'PyObject* PyEval_CallObjectWithKeywords(PyObject*, PyObject*, PyObject*)' is deprecated [-Wdeprecated-declarations] 34 | PyEval_CallObjectWithKeywords(callable, arg, (PyObject *)NULL) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ key-bindings.cc:55:32: note: in expansion of macro 'PyEval_CallObject' 55 | PyObject *result_py = PyEval_CallObject(function_py, arg_list); | ^~~~~~~~~~~~~~~~~ /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../src/graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': ../src/graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../src/gtk-utils.hh:26, from gtk-utils.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LigandViewMesh.lo LigandViewMesh.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from init-from-gtkbuilder.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-callbacks-outer.lo lbg-callbacks-outer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-callbacks-outer.cc -fPIC -DPIC -o .libs/lbg-callbacks-outer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-interface.lo lbg-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LigandViewMesh.cc -fPIC -DPIC -o .libs/LigandViewMesh.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-interface.cc -fPIC -DPIC -o .libs/lbg-interface.o gtk-manual.cc: In function 'GtkWidget* create_symmetry_colour_selection_window()': gtk-manual.cc:97:49: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 97 | colorseldialog = gtk_color_chooser_dialog_new("Symmetry Colour Selection", parent_window); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'void on_display_manager_selections_and_colours_combobox_changed(GtkComboBox*, gpointer)': gtk-manual.cc:320:51: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 320 | gchar *txt = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* selections_and_colours_combobox(int)': gtk-manual.cc:376:48: warning: 'GtkWidget* gtk_combo_box_text_new()' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 376 | GtkWidget *combobox = gtk_combo_box_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:38:15: note: declared here 38 | GtkWidget* gtk_combo_box_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:383:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 383 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Atom)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:384:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 384 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Chain)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:385:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 385 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Molecule)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:387:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 387 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("C-alphas/Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:388:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 388 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs + Ligands")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:389:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 389 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs+Ligs SecStr Col")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:390:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 390 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Jones' Rainbow")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:391:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 391 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Sec. Str. Bonds")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:392:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 392 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Atom - No Waters")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:393:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 393 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:394:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 394 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - All")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:395:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 395 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Occupancy")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:447:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 447 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Model.lo Model.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from lbg-interface.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Model.cc -fPIC -DPIC -o .libs/Model.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc In file included from molecular-mesh-generator.hh:43, from Model.hh:39, from Model.cc:37: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix-utils.lo matrix-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix-utils.cc -fPIC -DPIC -o .libs/matrix-utils.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh.lo Mesh.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-glTF.lo Mesh-from-glTF.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh.cc -fPIC -DPIC -o .libs/Mesh.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-glTF.cc -fPIC -DPIC -o .libs/Mesh-from-glTF.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from Mesh-from-glTF.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds-instanced.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds-instanced.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds-instanced.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from lbg-interface.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds.lo Mesh-from-graphical-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o meshed-generic-display-object.lo meshed-generic-display-object.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c meshed-generic-display-object.cc -fPIC -DPIC -o .libs/meshed-generic-display-object.o In file included from molecular-mesh-generator.hh:43, from Mesh-from-graphical-bonds.cc:703: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-molecule-meshes.lo model-molecule-meshes.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info.lo molecule-class-info.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-molecule-meshes.cc -fPIC -DPIC -o .libs/model-molecule-meshes.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from meshed-generic-display-object.cc:37: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info.cc -fPIC -DPIC -o .libs/molecule-class-info.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-alignment.lo molecule-class-info-alignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-alignment.cc -fPIC -DPIC -o .libs/molecule-class-info-alignment.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-analysis.lo molecule-class-info-analysis.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from model-molecule-meshes.cc:34: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info.cc:90: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-analysis.cc -fPIC -DPIC -o .libs/molecule-class-info-analysis.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-alignment.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:84, from molecule-class-info-analysis.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-bonds.lo molecule-class-info-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-bonds.cc -fPIC -DPIC -o .libs/molecule-class-info-bonds.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info.cc:77: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-bonds.cc:22: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-build.lo molecule-class-info-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-build.cc -fPIC -DPIC -o .libs/molecule-class-info-build.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-build.cc:36: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.hh:29, from molecule-class-info.cc:80: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../api/coot-molecule.hh:69, from molecule-class-info.cc:120: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from molecule-class-info.cc:25: /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = glm::vec<3, float, glm::packed_highp>; _T2 = float&; typename __strip_reference_wrapper::type>::__type = glm::vec<3, float, glm::packed_highp>; typename decay<_Tp>::type = glm::vec<3, float, glm::packed_highp>; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': molecule-class-info.cc:10770:54: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair, float>' when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps.lo molecule-class-info-maps.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps-2.lo molecule-class-info-maps-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps-2.cc -fPIC -DPIC -o .libs/molecule-class-info-maps-2.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps.cc -fPIC -DPIC -o .libs/molecule-class-info-maps.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-molecular-symmetry.lo molecule-class-info-molecular-symmetry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-molecular-symmetry.cc -fPIC -DPIC -o .libs/molecule-class-info-molecular-symmetry.o In file included from molecule-class-info.h:84, from molecule-class-info-maps-2.cc:26: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-molecular-symmetry.cc:22: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:84, from molecule-class-info-maps.cc:56: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kdc.lo molecule-class-info-kdc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kdc.cc -fPIC -DPIC -o .libs/molecule-class-info-kdc.o In file included from molecule-class-info.h:84, from molecule-class-info-kdc.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150, from molecule-class-info-bonds.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots.lo molecule-class-info-dots.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots.cc -fPIC -DPIC -o .libs/molecule-class-info-dots.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots-internal.lo molecule-class-info-dots-internal.cc In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps-2.cc:209: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots-internal.cc -fPIC -DPIC -o .libs/molecule-class-info-dots-internal.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-other.lo molecule-class-info-other.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-other.cc -fPIC -DPIC -o .libs/molecule-class-info-other.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150, from molecule-class-info-maps.cc:79: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info-dots.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps.cc:88: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info-other.cc:67: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mutate.lo molecule-class-info-mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mutate.cc -fPIC -DPIC -o .libs/molecule-class-info-mutate.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-other.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-residues.lo molecule-class-info-residues.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-residues.cc -fPIC -DPIC -o .libs/molecule-class-info-residues.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info-mutate.cc:52: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info-residues.cc:45: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-refine.lo molecule-class-info-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-refine.cc -fPIC -DPIC -o .libs/molecule-class-info-refine.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-other.cc:84: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kk.lo molecule-class-info-kk.cc In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kk.cc -fPIC -DPIC -o .libs/molecule-class-info-kk.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-refine.cc:40: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-kk.cc:25: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-surface.lo molecule-class-info-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-surface.cc -fPIC -DPIC -o .libs/molecule-class-info-surface.o In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-refine.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair > molecule_class_info_t::get_clash_score(const coot::minimol::molecule&, bool, int) const': molecule-class-info-other.cc:3805:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3805 | std::pair rotamer_info = get_minimol_pos(a_rotamer); | ^ molecule-class-info-mutate.cc: In member function 'void molecule_class_info_t::spin_search(clipper::Xmap&, const std::string&, int, const std::string&, const std::pair, std::__cxx11::basic_string >&, const std::vector >&)': molecule-class-info-mutate.cc:1341:47: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1341 | float angle = coot::util::spin_search(xmap, res, tors).first; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info-surface.cc:39: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-surface.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-string.lo molecule-class-info-string.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-string.cc -fPIC -DPIC -o .libs/molecule-class-info-string.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-string.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-patterson.lo molecule-class-info-patterson.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-patterson.cc -fPIC -DPIC -o .libs/molecule-class-info-patterson.o In file included from molecule-class-info.h:84, from molecule-class-info-patterson.cc:45: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-ncs.lo molecule-class-info-ncs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-ncs.cc -fPIC -DPIC -o .libs/molecule-class-info-ncs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mol-tris.lo molecule-class-info-mol-tris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mol-tris.cc -fPIC -DPIC -o .libs/molecule-class-info-mol-tris.o In file included from molecule-class-info.h:84, from molecule-class-info-ncs.cc:47: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-widget-work.lo molecule-class-info-widget-work.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-widget-work.cc -fPIC -DPIC -o .libs/molecule-class-info-widget-work.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:84, from molecule-class-info-widget-work.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-ncs.cc:45: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from molecule-class-info-mol-tris.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': molecule-class-info-patterson.cc:111:47: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::I_sigI]': molecule-class-info-patterson.cc:196:24: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-geometry.lo molecule-class-info-geometry.cc In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-geometry.cc -fPIC -DPIC -o .libs/molecule-class-info-geometry.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:84, from molecule-class-info-geometry.cc:29: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-ncs.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:111:54: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson_using_intensities(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:196:31: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 196 | if (!isig[ih.hkl()].missing()) { | ~~~~~~~~~~~~~^ In file included from molecule-class-info-ncs.cc:51: graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ molecule-class-info-ncs.cc: In member function 'std::pair molecule_class_info_t::chain_centre_and_radius(const std::string&) const': molecule-class-info-ncs.cc:2623:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2623 | molecule_class_info_t::chain_centre_and_radius(const std::string &chain_id) const { | ^~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150, from molecule-class-info-widget-work.cc:530: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator.lo molecular-mesh-generator.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator.cc -fPIC -DPIC -o .libs/molecular-mesh-generator.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator-mol-tris.lo molecular-mesh-generator-mol-tris.cc In file included from molecular-mesh-generator.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator-mol-tris.cc -fPIC -DPIC -o .libs/molecular-mesh-generator-mol-tris.o In file included from molecular-mesh-generator-mol-tris.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o obj_loader.lo obj_loader.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c obj_loader.cc -fPIC -DPIC -o .libs/obj_loader.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pick.lo pick.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pick.cc -fPIC -DPIC -o .libs/pick.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o probe-clash-score.lo probe-clash-score.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c probe-clash-score.cc -fPIC -DPIC -o .libs/probe-clash-score.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from probe-clash-score.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from pick.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db-interface.lo protein_db-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db-interface.cc -fPIC -DPIC -o .libs/protein_db-interface.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from protein_db-interface.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pumpkin.lo pumpkin.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pumpkin.cc -fPIC -DPIC -o .libs/pumpkin.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python-classes.lo python-classes.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python-classes.cc -fPIC -DPIC -o .libs/python-classes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Particle.lo Particle.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Particle.cc -fPIC -DPIC -o .libs/Particle.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o read-phs.lo read-phs.c In file included from Particle.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from pick.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c read-phs.c -fPIC -DPIC -o .libs/read-phs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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text-rendering-utils.lo text-rendering-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c text-rendering-utils.cc -fPIC -DPIC -o .libs/text-rendering-utils.o In file included from read-cif.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints-editor.lo restraints-editor.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rsr-functions.lo rsr-functions.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from text-rendering-utils.cc:51: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-editor.cc -fPIC -DPIC -o .libs/restraints-editor.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rsr-functions.cc -fPIC -DPIC -o .libs/rsr-functions.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c screendump-tga.cc -fPIC -DPIC -o .libs/screendump-tga.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from rsr-functions.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from restraints-editor.cc:49: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from screendump-tga.cc:36: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from sdf-interface.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view.lo sequence-view.cc /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o seq-view-interface.lo seq-view-interface.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view.cc -fPIC -DPIC -o .libs/sequence-view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Shader.lo Shader.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Shader.cc -fPIC -DPIC -o .libs/Shader.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from pick.cc:54: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from text-rendering-utils.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ seq-view-interface.c: In function 'seq_lookup_widget': seq-view-interface.c:56:14: warning: unused variable 'parent' [-Wunused-variable] 56 | GtkWidget *parent = NULL, *found_widget = NULL; | ^~~~~~ seq-view-interface.c: In function 'create_sequence_view_dialog': seq-view-interface.c:90:3: warning: 'gtk_dialog_new' is deprecated [-Wdeprecated-declarations] 90 | sequence_view_dialog = gtk_dialog_new (); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:42, from seq-view-interface.c:46: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ seq-view-interface.c:98:3: warning: 'gtk_dialog_get_content_area' is deprecated [-Wdeprecated-declarations] 98 | dialog_vbox1 = gtk_dialog_get_content_area(GTK_DIALOG(sequence_view_dialog)); | ^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ seq-view-interface.c:100:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 100 | gtk_widget_show (dialog_vbox1); | ^~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:108:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 108 | gtk_widget_show (sequence_view_scrolledwindow); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:127:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 127 | gtk_widget_show (hbox1); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:143:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 143 | gtk_widget_show (sequence_view_close_button); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c: In function 'on_sequence_view_close_button_clicked': seq-view-interface.c:157:15: warning: unused variable 'window' [-Wunused-variable] 157 | GtkWidget *window = seq_lookup_widget(GTK_WIDGET(button), "sequence_view_dialog"); | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sound.lo sound.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sound.cc -fPIC -DPIC -o .libs/sound.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from restraints-editor.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from sound.cc:45: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o startup-utils.lo startup-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c startup-utils.cc -fPIC -DPIC -o .libs/startup-utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing.lo testing.cc In file included from sound.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing.cc -fPIC -DPIC -o .libs/testing.o In file included from startup-utils.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing-2.lo testing-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing-2.cc -fPIC -DPIC -o .libs/testing-2.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Texture.lo Texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Texture.cc -fPIC -DPIC -o .libs/Texture.o In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o TextureMesh.lo TextureMesh.cc /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o trackball.lo trackball.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c TextureMesh.cc -fPIC -DPIC -o .libs/TextureMesh.o libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c trackball.c -fPIC -DPIC -o .libs/trackball.o trackball.c:262:17: warning: argument 1 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ In file included from trackball.c:54: trackball.h:82:18: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:30: warning: argument 2 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ trackball.h:82:29: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:43: warning: argument 3 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~~~ trackball.h:82:40: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~~~ In file included from Texture.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o user-mods.lo user-mods.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o xmap-utils.lo xmap-utils.cc In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c user-mods.cc -fPIC -DPIC -o .libs/user-mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-utils.cc -fPIC -DPIC -o .libs/xmap-utils.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../ideal/simple-restraint.hh:162, from testing-2.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from testing.cc:67: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from TextureMesh.cc:48: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc In file included from user-mods.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing-2.cc:25: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing-2.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from restraints-editor.cc:37: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_atom_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:126:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 126 | GtkTreeStore *tree_store_atoms = gtk_tree_store_new (4, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | // G_TYPE_FLOAT // for partial change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | G_TYPE_INT // for formal change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:288: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:135:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 135 | gtk_tree_view_set_model(tv_atoms, GTK_TREE_MODEL(tree_store_atoms)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:138:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 138 | gtk_tree_store_append(tree_store_atoms, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:148:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 148 | gtk_tree_store_set(tree_store_atoms, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | 0, restraints.atom_info[i].atom_id_4c.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | 1, restraints.atom_info[i].type_symbol.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | 2, restraints.atom_info[i].type_energy.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | 3, fc, | ~~~~~~ 153 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkCellRenderer* coot::restraints_editor::add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': restraints-editor.cc:172:62: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 172 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:69: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:173:55: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 173 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:174:33: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 174 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:175:30: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 175 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:176:34: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 176 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:177:37: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 177 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:180:42: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 180 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In static member function 'static void coot::restraints_editor::cell_edited_callback(GtkCellRendererText*, gchar*, gchar*, gpointer)': restraints-editor.cc:214:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 214 | GtkTreePath *path = gtk_tree_path_new_from_string(path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:197:14: note: declared here 197 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:221:28: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 221 | gtk_tree_model_get_iter (model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:310:19: note: declared here 310 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:228:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 228 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | column, f, | ~~~~~~~~~~ 230 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:236:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 236 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | column, ii, | ~~~~~~~~~~~ 238 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:243:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 243 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 | column, new_text, | ~~~~~~~~~~~~~~~~~ 245 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_angle_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:346:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 346 | gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:353:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 353 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:356:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 356 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:357:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 357 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | 0, restraints.angle_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | 1, restraints.angle_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 | 2, restraints.angle_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 | 3, restraints.angle_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | 4, restraints.angle_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_info_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:383:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 383 | gtk_tree_store_new (7, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 | G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:391:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 391 | gtk_tree_view_set_model(tv_info, GTK_TREE_MODEL(tree_store_info)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:402:25: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 402 | gtk_tree_store_append(tree_store_info, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:403:22: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 403 | gtk_tree_store_set(tree_store_info, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 | 0, restraints.residue_info.comp_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 | 1, tlc.c_str(), | ~~~~~~~~~~~~~~~ 406 | 2, restraints.residue_info.name.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 | 3, restraints.residue_info.group.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 | 4, restraints.residue_info.number_atoms_all, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 | 5, restraints.residue_info.number_atoms_nh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 | 6, restraints.residue_info.description_level.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_bond_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:430:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 430 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:436:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 436 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:439:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 439 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:456:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 456 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 | 0, restraints.bond_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 | 1, restraints.bond_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | 2, restraints.bond_restraint[i].type().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | 3, value_dist, | ~~~~~~~~~~~~~~ 461 | 4, value_esd, | ~~~~~~~~~~~~~ 462 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_torsion_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:493:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 493 | gtk_tree_store_new (8, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 494 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:500:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 500 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:503:29: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 503 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:504:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 504 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 | 0, restraints.torsion_restraint[i].id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 | 1, restraints.torsion_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | 2, restraints.torsion_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | 3, restraints.torsion_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | 4, restraints.torsion_restraint[i].atom_id_4_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 | 5, restraints.torsion_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 | 6, restraints.torsion_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | coot::restraints_editor::TORSION_COL_PERIODICTY, restraints.torsion_restraint[i].periodicity(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_chiral_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:536:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 536 | gtk_tree_store_new (6, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 537 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 | G_TYPE_STRING); | ~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:543:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 543 | gtk_tree_view_set_model(tv_chirals, GTK_TREE_MODEL(tree_store_chirals)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:548:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 548 | gtk_tree_store_append(tree_store_chirals, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:549:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 549 | gtk_tree_store_set(tree_store_chirals, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | 0, restraints.chiral_restraint[i].Chiral_Id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 | 1, restraints.chiral_restraint[i].atom_id_c_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | 2, restraints.chiral_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | 3, restraints.chiral_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | 4, restraints.chiral_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 | coot::restraints_editor::CHIRAL_COL_SIGN, chiral_volume_string.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_plane_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:592:34: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 592 | gtk_tree_view_set_model(tv_planes, GTK_TREE_MODEL(tree_store_planes)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:596:35: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 596 | gtk_tree_store_append(tree_store_planes, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:599:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 599 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 | esd_col_no, restraints.plane_restraint[iplane].dist_esd(0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:602:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 602 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | 0, restraints.plane_restraint[iplane].plane_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:606:35: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 606 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 | iat+1, restraints.plane_restraint[iplane][iat].first.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkTreeStore* coot::restraints_editor::make_tree_store_for_planes(int)': restraints-editor.cc:637:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 637 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 638 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:642:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 642 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 643 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:647:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 648 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 650 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:653:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 653 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 654 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:659:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 659 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 660 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:665:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 665 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 666 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:671:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 671 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 672 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 675 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:678:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 678 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 679 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:685:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 685 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 686 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:692:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 692 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 693 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:699:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 699 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 700 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 704 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:707:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 707 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 708 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:715:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 715 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 716 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:723:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 723 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 724 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:731:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 731 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 732 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 737 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:740:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 740 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 741 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:749:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 749 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 750 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:758:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 758 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 759 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:767:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 767 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 768 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 774 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:777:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 777 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 778 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:787:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 787 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 788 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:797:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 797 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 798 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:807:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 807 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 808 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 815 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_bond_restraints() const': restraints-editor.cc:857:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 857 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:868:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 868 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:882:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 882 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:890:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 890 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_angle_restraints() const': restraints-editor.cc:912:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 912 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:923:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 923 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:934:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 934 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:942:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 942 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_torsion_restraints() const': restraints-editor.cc:970:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 970 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:984:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 984 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:999:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 999 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1008:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1008 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1013:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1013 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_plane_restraints() const': restraints-editor.cc:1050:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1050 | bool b = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1061:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1061 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1072:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1072 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &val, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1094:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1094 | b = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_chiral_restraints() const': restraints-editor.cc:1105:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1105 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1117:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1117 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_chirals.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1134:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1134 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair > coot::restraints_editor::get_atom_info() const': restraints-editor.cc:1178:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1178 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1189:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1189 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1202:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1202 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1209:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1209 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:335:19: note: declared here 335 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair coot::restraints_editor::get_residue_info() const': restraints-editor.cc:1251:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1251 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_info.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:321:19: note: declared here 321 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1265:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1265 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1280:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1280 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void restraints_editor_save_restraint_by_widget(GtkWidget*)': restraints-editor.cc:1368:40: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 1368 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(ww), filename.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:128: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void save_monomer_restraints_by_widget(GtkDialog*)': restraints-editor.cc:1386:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1386 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::delete_restraint(GtkWidget*)': restraints-editor.cc:1423:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1423 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1427:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1427 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:286: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1428:34: warning: 'gboolean gtk_tree_store_remove(GtkTreeStore*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1428 | gtk_tree_store_remove(tree_store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:95:15: note: declared here 95 | gboolean gtk_tree_store_remove (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::add_restraint(GtkWidget*)': restraints-editor.cc:1456:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1456 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1460:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1460 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1464:34: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1464 | gtk_tree_store_append(tree_store, &iter, parent); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from testing.hh:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from testing.cc:50: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing.cc:63: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-density.lo spherical-density.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-density.cc -fPIC -DPIC -o .libs/spherical-density.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o single-map-properties-dialog.lo single-map-properties-dialog.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation.lo validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c single-map-properties-dialog.cc -fPIC -DPIC -o .libs/single-map-properties-dialog.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation.cc -fPIC -DPIC -o .libs/validation.o In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from sdf-interface.cc:23: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:413:56: /usr/include/c++/13/bits/stl_pair.h:688:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 688 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:403:24: note: 'v' declared here 403 | clipper::Coord_orth v; | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from spherical-density.cc:30: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from single-map-properties-dialog.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from single-map-properties-dialog.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o view.lo view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c view.cc -fPIC -DPIC -o .libs/view.o In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from validation.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o widget-from-builder.lo widget-from-builder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c widget-from-builder.cc -fPIC -DPIC -o .libs/widget-from-builder.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from view.cc:27: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1636:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1636 | std::pair p = conformer_info[i].get_set_and_real_torsions(itor); | ^ testing.cc: In function 'int test_lsq_plane()': testing.cc:2634:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2634 | std::pair d = coot::lsq_plane_deviation(v, pt); | ^ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from widget-from-builder.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from single-map-properties-dialog.hh:32, from single-map-properties-dialog.cc:31: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void on_colour_chooser_dialog_response(GtkDialog*, int)': single-map-properties-dialog.cc:364:33: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 364 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(dialog), &color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void show_map_colour_selector_with_parent(int, GtkWidget*)': single-map-properties-dialog.cc:385:70: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 385 | GtkWidget *colour_chooser_dialog = gtk_color_chooser_dialog_new("Test", GTK_WINDOW(parent_window)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc:392:33: warning: 'void gtk_color_chooser_set_rgba(GtkColorChooser*, const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 392 | gtk_color_chooser_set_rgba(GTK_COLOR_CHOOSER(colour_chooser_dialog), map_colour_p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:69:10: note: declared here 69 | void gtk_color_chooser_set_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from spherical-density.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../src/post-process-coot-wrap-guile.sh coot_wrap_guile_pre.cc coot_wrap_guile.cc adding gtk2 and guile ifdefs from coot_wrap_guile_pre.cc coot_wrap_guile.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_guile.lo coot_wrap_guile.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from widget-from-builder.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from validation.cc:30: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1601:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1601 | int test_ligand_conformer_torsion_angles() { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_lsq_plane()': testing.cc:2620:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2620 | int test_lsq_plane() { | ^~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lepoxy -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python311 -lfreetype -lsqlite3 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/api/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/pli/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/layla/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ligand/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/validation-graphs/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/density-contour/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/build/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/skeleton/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/angles/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/db-main/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/high-res/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ideal/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coords/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/ccp4mg-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/mini-mol/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/analysis/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/protein_db/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/cootilus/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/cootaneer/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/compat/.libs ../api/.libs/libcoot-api.so ../pli/.libs/libcoot-pli.so ../layla/.libs/libcoot-layla.so ../ligand/.libs/libcoot-res-tracer.so ../ligand/.libs/libcoot-ligand.so ../validation-graphs/.libs/libcoot-validation-graphs.so ../lidia-core/.libs/libcoot-lidia-core.so ../density-contour/.libs/libcoot-isosurface.so ../build/.libs/libcoot-cabuild.so ../skeleton/.libs/libcoot-skeleton.so ../angles/.libs/libcoot-AngleInfo.so ../db-main/.libs/libcoot-db-main.so ../high-res/.libs/libcoot-high-res.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../protein_db/.libs/libcoot-protein-db.so ../cootilus/.libs/libcootilus.so ../cootaneer/.libs/libcootaneer.so ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../compat/.libs/libcoot-compat.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python311 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootsumo.so.0" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so.0") libtool: link: (cd ".libs" && rm -f "libcootsumo.so" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so") libtool: link: ( cd ".libs" && rm -f "libcootsumo.la" && ln -s "../libcootsumo.la" "libcootsumo.la" ) make all-am make[4]: Entering directory '/var/www/debian/coot/coot/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks.o glade-callbacks.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-main-window.o glade-callbacks-main-window.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-preferences.o glade-callbacks-preferences.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-shader-settings.o glade-callbacks-shader-settings.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-startup.o new-startup.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o setup-gui-components.o setup-gui-components.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o create-menu-item-actions.o create-menu-item-actions.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from new-startup.cc:32: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from setup-gui-components.cc:28: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from create-menu-item-actions.cc:31: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from glade-callbacks-preferences.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_others_radiobutton_toggled(GtkToggleButton*, gpointer)': glade-callbacks-preferences.cc:1109:43: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1109 | gint ival = gtk_combo_box_get_active(GTK_COMBO_BOX(w)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93, from glade-callbacks-preferences.cc:28: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1124:39: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1124 | gint ival = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colour_own_radiobutton_toggled(GtkCheckButton*, gpointer)': glade-callbacks-preferences.cc:1163:36: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1163 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colorbutton_color_set(GtkColorButton*, gpointer)': glade-callbacks-preferences.cc:1179:30: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1179 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_bond_width_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1240:33: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1240 | val = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from glade-callbacks-main-window.cc:57: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from main.cc:81: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o density-score-by-residue-src.o density-score-by-residue-src.cc In file included from ../MoleculesToTriangles/CXXClasses/RendererGLSL.hpp:33, from graphics-info.h:53, from glade-callbacks.cc:53: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - | ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine | In file included from ../coot-utils/coot-map-utils.hh:33, from density-score-by-residue-src.cc:50: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from density-score-by-residue-src.cc:52: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:37, from glade-callbacks-shader-settings.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:37, from glade-callbacks.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot.lo coot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot.cc -fPIC -DPIC -o .libs/coot.o swig -o coot_wrap_python_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/python3.11 -DUSE_PYTHON -DUSE_LIBCURL -I../src -I.. -shadow -python -c++ ../src/coot.i In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from glade-callbacks-main-window.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from setup-gui-components.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from main.cc:75: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ setup-gui-components.cc: In function 'void setup_validation_graph_dialog()': setup-gui-components.cc:155:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 155 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox),GTK_TREE_MODEL(graphics_info_t::validation_graph_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:156:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 156 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_ramachandran_plot_chooser_dialog()': setup-gui-components.cc:163:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 163 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox), GTK_TREE_MODEL(graphics_info_t::ramachandran_plot_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:164:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 164 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void attach_css_style_class_to_overlays()': setup-gui-components.cc:181:36: warning: 'void gtk_css_provider_load_from_data(GtkCssProvider*, const char*, gssize)' is deprecated: Use 'gtk_css_provider_load_from_string' instead [-Wdeprecated-declarations] 181 | gtk_css_provider_load_from_data (provider, ".mainWindowOverlayChild { background: rgba(0,0,0,0.7); }", -1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:97: /usr/include/gtk-4.0/gtk/gtkcssprovider.h:49:18: note: declared here 49 | void gtk_css_provider_load_from_data (GtkCssProvider *css_provider, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In lambda function: setup-gui-components.cc:184:62: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 184 | GtkStyleContext *context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:185:38: warning: 'void gtk_style_context_add_provider(GtkStyleContext*, GtkStyleProvider*, guint)' is deprecated [-Wdeprecated-declarations] 185 | gtk_style_context_add_provider (context, GTK_STYLE_PROVIDER (provider), GTK_STYLE_PROVIDER_PRIORITY_APPLICATION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:263: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:64:6: note: declared here 64 | void gtk_style_context_add_provider (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:186:35: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 186 | gtk_style_context_add_class (context, "mainWindowOverlayChild"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void add_python_scripting_entry_completion(GtkWidget*)': setup-gui-components.cc:208:61: warning: 'GtkEntryCompletion* gtk_entry_completion_new()' is deprecated [-Wdeprecated-declarations] 208 | GtkEntryCompletion *completion = gtk_entry_completion_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:66:21: note: declared here 66 | GtkEntryCompletion *gtk_entry_completion_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:209:45: warning: 'void gtk_entry_completion_set_popup_completion(GtkEntryCompletion*, gboolean)' is deprecated [-Wdeprecated-declarations] 209 | gtk_entry_completion_set_popup_completion(completion, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:108:21: note: declared here 108 | void gtk_entry_completion_set_popup_completion (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:210:40: warning: 'void gtk_entry_completion_set_text_column(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 210 | gtk_entry_completion_set_text_column(completion, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:127:21: note: declared here 127 | void gtk_entry_completion_set_text_column (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:211:47: warning: 'void gtk_entry_completion_set_minimum_key_length(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 211 | gtk_entry_completion_set_minimum_key_length(completion, 2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:85:21: note: declared here 85 | void gtk_entry_completion_set_minimum_key_length (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:212:28: warning: 'void gtk_entry_set_completion(GtkEntry*, GtkEntryCompletion*)' is deprecated [-Wdeprecated-declarations] 212 | gtk_entry_set_completion(GTK_ENTRY(entry), completion); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkentry.h:160:21: note: declared here 160 | void gtk_entry_set_completion (GtkEntry *entry, | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:279:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 279 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:283:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 283 | gtk_list_store_append( store, &iter ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:286:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 286 | gtk_list_store_set( store, &iter, 0, c.c_str(), -1 ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:289:34: warning: 'void gtk_entry_completion_set_model(GtkEntryCompletion*, GtkTreeModel*)' is deprecated [-Wdeprecated-declarations] 289 | gtk_entry_completion_set_model(completion, GTK_TREE_MODEL(store)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:74:21: note: declared here 74 | void gtk_entry_completion_set_model (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from create-menu-item-actions.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from create-menu-item-actions.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ create-menu-item-actions.cc: In function 'void on_coords_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:58:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 58 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "recentering"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:128: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:68:50: warning: 'GListModel* gtk_file_chooser_get_files(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 68 | GListModel *lm = gtk_file_chooser_get_files(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:125:22: note: declared here 125 | GListModel * gtk_file_chooser_get_files (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_dataset_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:98:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 98 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_map_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:128:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 128 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_coordinates_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:145:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 145 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 146 | parent_window, | ~~~~~~~~~~~~~~ 147 | action, | ~~~~~~~ 148 | ("_Cancel"), | ~~~~~~~~~~~~ 149 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 150 | ("_Open"), | ~~~~~~~~~~ 151 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 152 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:129: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:153:40: warning: 'void gtk_file_chooser_set_select_multiple(GtkFileChooser*, gboolean)' is deprecated [-Wdeprecated-declarations] 153 | gtk_file_chooser_set_select_multiple(GTK_FILE_CHOOSER(dialog), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:98:22: note: declared here 98 | void gtk_file_chooser_set_select_multiple (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:170:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 170 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "recentering", "Recentre", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_dataset_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:196:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 196 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:204:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 204 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void auto_open_mtz_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:231:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 231 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:240:42: warning: 'gboolean gtk_file_chooser_set_current_folder(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 240 | gtk_file_chooser_set_current_folder(GTK_FILE_CHOOSER(dialog), f_dir, &error); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:127:22: note: declared here 127 | gboolean gtk_file_chooser_set_current_folder (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:247:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 247 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_map_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:266:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 266 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 267 | parent_window, | ~~~~~~~~~~~~~~ 268 | action, | ~~~~~~~ 269 | ("_Cancel"), | ~~~~~~~~~~~~ 270 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 271 | ("_Open"), | ~~~~~~~~~~ 272 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 273 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:282:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 282 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_cif_dictionary_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:342:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 342 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:347:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 347 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "create-molecule"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void import_cif_dictionary_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:368:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 368 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:375:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 375 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "create-molecule", "Create Molecule", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:380:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 380 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_state_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:572:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 572 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void save_state_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:593:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 593 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save State", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 594 | parent_window, | ~~~~~~~~~~~~~~ 595 | action, | ~~~~~~~ 596 | ("Cancel"), | ~~~~~~~~~~~ 597 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 598 | ("Save"), | ~~~~~~~~~ 599 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 600 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:604:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 604 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:616:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 616 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_clicked(GtkButton*, gpointer)': create-menu-item-actions.cc:629:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 629 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save Views", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 630 | parent_window, | ~~~~~~~~~~~~~~ 631 | action, | ~~~~~~~ 632 | ("Cancel"), | ~~~~~~~~~~~ 633 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 634 | ("Save"), | ~~~~~~~~~ 635 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 636 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:640:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 640 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_run_script_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:1097:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1097 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void run_script_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:1120:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 1120 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Run Script File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 1121 | parent_window, | ~~~~~~~~~~~~~~ 1122 | action, | ~~~~~~~ 1123 | ("_Cancel"), | ~~~~~~~~~~~~ 1124 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 1125 | ("_Open"), | ~~~~~~~~~~ 1126 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 1127 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void screenshot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2229:38: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 2229 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(file_chooser), "coot-screendump.tga"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void show_validation_graphs_dialog(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2361:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2361 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void ramachandran_plot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2376:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2376 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from new-startup.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_save_coords_filechooser_dialog_response(GtkDialog*, int)': glade-callbacks.cc:868:48: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 868 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:128: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_save_coords_dialog_save_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:915:67: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 915 | GtkWidget *file_chooser_dialog = gtk_file_chooser_dialog_new("Save Coordinates", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 916 | parent_window, | ~~~~~~~~~~~~~~ 917 | action, | ~~~~~~~ 918 | ("_Cancel"), | ~~~~~~~~~~~~ 919 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 920 | ("_Save"), | ~~~~~~~~~~ 921 | GTK_RESPONSE_YES, | ~~~~~~~~~~~~~~~~~ 922 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:129: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coords/.libs/libcoot-coords.so ../mini-mol/.libs/libcoot-mini-mol.so ../ligand/.libs/libcoot-ligand.so ../analysis/.libs/libcoot-analysis.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -fopenmp glade-callbacks.cc: In function 'void on_phs_coordinates_filechooserdialog1_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5195:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5195 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(phs_filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_screendump_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5303:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5303 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(file_chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_residue_editor_select_monomer_type_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:5475:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 5475 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_export_map_file_chooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6047:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6047 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_geman_mcclure_alpha_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6234:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6234 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_lennard_jones_epsilon_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6250:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6250 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6251:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6251 | int active_item_idx = gtk_combo_box_get_active(combobox); // save it for set active item next time | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:93: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_rama_restraints_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6261:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6261 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6262:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6262 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_torsion_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6273:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6273 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6274:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6274 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_overall_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6285:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6285 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_mtz_file_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6483:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 6483 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(w), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6497:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6497 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6517:42: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6517 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(file_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6518:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6518 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(file_combobox), file_name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6519:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6519 | gtk_combo_box_set_active(GTK_COMBO_BOX(file_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_cif_dictionary_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6588:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6588 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_model_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6610:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6610 | if (gtk_combo_box_get_active_iter(self, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6612:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6612 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6612:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6612 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:63: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_chain_id_combobox_changed(GtkComboBoxText*, gpointer)': glade-callbacks.cc:6622:66: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6622 | auto chain_id = std::string(gtk_combo_box_text_get_active_text(self)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_ramachandran_plot_molecule_chooser_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6701:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6701 | if (gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6703:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6703 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6703:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6703 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:363:19: note: declared here 363 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ new-startup.cc: In function 'void init_framebuffers(GtkWidget*)': new-startup.cc:57:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 57 | gtk_widget_get_allocation(GTK_WIDGET(glarea), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127, from graphics-info.h:72: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre.cc coot_wrap_python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" -DPACKAGE_STRING=\"coot\ 1.x-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_python.lo coot_wrap_python.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from main.cc:23: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.x-pre\" "-DPACKAGE_STRING=\"coot 1.x-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.x-pre\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.11\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/usr/include -DCLIPPER_HAS_TOP8000 -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_python.cc -fPIC -DPIC -o .libs/coot_wrap_python.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:150: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from main.cc:96: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks-main-window.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from glade-callbacks-main-window.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ glade-callbacks-main-window.cc: In function 'void on_save_coordinates_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:359:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 359 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:128: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_dataset_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:388:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 388 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_map_name_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:419:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 419 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from probe-clash-score.hh:32, from c-interface-ligands-swig.hh:35, from coot_wrap_python.cc:3419: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z,relro -o coot-bin main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o libcootsumo.la ../layla/libcoot-layla.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.11 libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z -Wl,relro -o .libs/coot-bin main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o ./.libs/libcootsumo.so ../layla/.libs/libcoot-layla.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.11 -fopenmp /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -Wl,-rpath -Wl,/var/www/debian/coot/coot/src/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coot-utils/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/coords/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/geometry/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/pli/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/lidia-core/.libs -Wl,-rpath -Wl,/var/www/debian/coot/coot/utils/.libs ./.libs/libcootsumo.so ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../geometry/.libs/libcoot-geometry.so ../pli/.libs/libcoot-pli.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot.so.0" && ln -s "_coot.so.0.0.0" "_coot.so.0") libtool: link: (cd ".libs" && rm -f "_coot.so" && ln -s "_coot.so.0.0.0" "_coot.so") libtool: link: ( cd ".libs" && rm -f "_coot.la" && ln -s "../_coot.la" "_coot.la" ) make[4]: Leaving directory '/var/www/debian/coot/coot/src' make[3]: Leaving directory '/var/www/debian/coot/coot/src' Making all in ui make[3]: Entering directory '/var/www/debian/coot/coot/ui' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/var/www/debian/coot/coot/ui' make[3]: Entering directory '/var/www/debian/coot/coot' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/www/debian/coot/coot' make[2]: Leaving directory '/var/www/debian/coot/coot' dh_auto_build --buildsystem cmake cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' /usr/bin/cmake -S/var/www/debian/coot/coot -B/var/www/debian/coot/coot/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /var/www/debian/coot/coot/obj-aarch64-linux-gnu/CMakeFiles /var/www/debian/coot/coot/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/depend make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend make[4]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' cd /var/www/debian/coot/coot/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -c /var/www/debian/coot/coot/lidia-core/svg-molecule.cc [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -c /var/www/debian/coot/coot/lidia-core/cod-types.cc [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o -c /var/www/debian/coot/coot/lidia-core/cod-atom-types.cc [ 3%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/chemical-feature-clusters.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/chemical-feature-clusters.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/chemical-feature-clusters.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/chemical-feature-clusters.cc.o -c /var/www/debian/coot/coot/lidia-core/chemical-feature-clusters.cc [ 3%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/bond-record-container-t.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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Building CXX object CMakeFiles/cootapi.dir/lidia-core/atom-types.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/atom-types.cc.o -MF 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-I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/rdkit-interface.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/rdkit-interface.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/rdkit-interface.cc.o -c /var/www/debian/coot/coot/lidia-core/rdkit-interface.cc [ 4%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/bond-table-record-t.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/bond-table-record-t.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/bond-table-record-t.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/bond-table-record-t.cc.o -c /var/www/debian/coot/coot/lidia-core/bond-table-record-t.cc [ 4%] Building CXX object CMakeFiles/cootapi.dir/pli/pi-stacking.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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-I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircle.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircle.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircle.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXCircle.cpp [ 7%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXException.cpp [ 8%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 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/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXFFTSolventMap.cpp [ 8%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXFortranFile.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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-I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXNewHood.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXNewHood.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXNewHood.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXNewHood.cpp [ 9%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXQADSurface.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp.o -MF 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-I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp [ 12%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXTorusElement.cpp [ 12%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXTorusNode.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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-I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXTriangle.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXTriangle.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXTriangle.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface/CXXTriangle.cpp [ 12%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXVCN.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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-I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp [ 14%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/BondsPrimitive.cpp [ 14%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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-I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorRule.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorRule.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorRule.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/ColorRule.cpp [ 15%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorScheme.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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-ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CXXMatrix.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CXXMatrix.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CXXMatrix.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/CXXMatrix.cpp [ 15%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp [ 16%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/CylindersPrimitive.cpp [ 16%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time 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-I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp [ 17%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DishyBase.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp [ 17%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp [ 17%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/FlatFanPrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 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CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Light.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/Light.cpp [ 18%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/LinesPrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/MolecularRepresentation.cpp [ 19%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 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/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/MolecularRepresentationInstance.cpp [ 19%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/MyMolecule.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time 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-I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/NRStuff.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/NRStuff.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/NRStuff.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/NRStuff.cpp [ 19%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/oglPolyhedron.cpp [ 20%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Polyhedron.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING 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-I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Quaternion.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Quaternion.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Quaternion.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/Quaternion.cpp [ 20%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Renderer.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Renderer.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Renderer.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Renderer.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/Renderer.cpp [ 21%] Building CXX object 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-I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SolidColorRule.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SolidColorRule.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SolidColorRule.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/SolidColorRule.cpp [ 22%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SpherePrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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-ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/SurfacePrimitive.cpp [ 23%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" 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/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/Vector3.cpp [ 24%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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-I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/lfit.c.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/lfit.c.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/lfit.c.o -c /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses/lfit.c [ 24%] Building CXX object CMakeFiles/cootapi.dir/api/rigid-body-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -MF CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o.d -o CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -c /var/www/debian/coot/coot/api/add-terminal-residue.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/api/rigid-body-fit.hh:7, from /var/www/debian/coot/coot/api/rigid-body-fit.cc:2: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/interfaces.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" 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CMakeFiles/cootapi.dir/api/coot-colour.cc.o -c /var/www/debian/coot/coot/api/coot-colour.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -c /var/www/debian/coot/coot/api/coot-molecule.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-backup.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/residue_by_phi_psi.hh:37, from /var/www/debian/coot/coot/api/add-terminal-residue.cc:29: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-bonds.cc In file included from /var/www/debian/coot/coot/api/coot-molecule-backup.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-bonds.cc:39: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45, from /var/www/debian/coot/coot/api/coot-molecule-backup.cc:29: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-bonds-instanced.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-maps.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/api/coot-molecule-backup.cc:32: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/api/coot-molecule.cc:37: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule-maps.cc:32: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-change-chain-id.cc In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45, from /var/www/debian/coot/coot/api/coot-molecule-maps.cc:36: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-moltris.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:174, from /var/www/debian/coot/coot/api/coot-molecule.hh:45, from /var/www/debian/coot/coot/api/coot-molecule.cc:38: /var/www/debian/coot/coot/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /var/www/debian/coot/coot/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-change-chain-id.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-validation.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-bonds-instanced.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-moltris.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-merge-molecules.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-refine.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-replace-fragment.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-validation.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-refine.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-replace-fragment.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-merge-molecules.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -c /var/www/debian/coot/coot/api/coot-molecule-blender.cc In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/coot-molecule-blender.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -c /var/www/debian/coot/coot/api/molecules-container-blender.cc In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-blender.cc:3: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container.cc.o -c /var/www/debian/coot/coot/api/molecules-container.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -c /var/www/debian/coot/coot/api/molecules-container-bucca-ml-growing.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container.cc:7: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-bucca-ml-growing.cc:2: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -c /var/www/debian/coot/coot/api/molecules-container-maps.cc In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -c /var/www/debian/coot/coot/api/molecules-container-mmrrcc.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -c /var/www/debian/coot/coot/api/molecules-container-superpose.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-maps.cc:2: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -c /var/www/debian/coot/coot/api/molecules-container-modelling.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-mmrrcc.cc:2: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-modelling.cc:4: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-superpose.cc:4: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -c /var/www/debian/coot/coot/api/molecules-container-ligand-fitting.cc [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -MF CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o.d -o CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -c /var/www/debian/coot/coot/api/phi-psi-prob.cc [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -c /var/www/debian/coot/coot/api/moorhen-h-bonds.cc [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -MF CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -c /var/www/debian/coot/coot/api/rama-plot-phi-psi.cc [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/daca.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/daca.cc.o -MF CMakeFiles/cootapi.dir/analysis/daca.cc.o.d -o CMakeFiles/cootapi.dir/analysis/daca.cc.o -c /var/www/debian/coot/coot/analysis/daca.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/moorhen-h-bonds.cc:2: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -MF CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o.d -o CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -c /var/www/debian/coot/coot/analysis/kolmogorov.cc [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/stats.cc.o -MF CMakeFiles/cootapi.dir/analysis/stats.cc.o.d -o CMakeFiles/cootapi.dir/analysis/stats.cc.o -c /var/www/debian/coot/coot/analysis/stats.cc In file included from /var/www/debian/coot/coot/analysis/daca.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/wligand.hh:25, from /var/www/debian/coot/coot/api/molecules-container-ligand-fitting.cc:4: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/analysis/kolmogorov.cc:25: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/analysis/stats.cc:25: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -MF CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o.d -o CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -c /var/www/debian/coot/coot/analysis/bfkurt.cc [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/mogul.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/mogul.cc.o -MF CMakeFiles/cootapi.dir/analysis/mogul.cc.o.d -o CMakeFiles/cootapi.dir/analysis/mogul.cc.o -c /var/www/debian/coot/coot/analysis/mogul.cc In file included from /var/www/debian/coot/coot/analysis/mogul.cc:29: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/analysis/mogul.cc:30: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -MF CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o.d -o CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -c /var/www/debian/coot/coot/analysis/b-factor-histogram.cc In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-ligand-fitting.cc:6: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/analysis/b-factor-histogram.cc:288: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -MF CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o.d -o CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -c /var/www/debian/coot/coot/analysis/typed-distances.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/cablam.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/cablam.cc.o -MF CMakeFiles/cootapi.dir/analysis/cablam.cc.o.d -o CMakeFiles/cootapi.dir/analysis/cablam.cc.o -c /var/www/debian/coot/coot/analysis/cablam.cc [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -MF CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -c /var/www/debian/coot/coot/density-contour/density-contour-triangles.cc [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -c /var/www/debian/coot/coot/density-contour/Vectors.cpp [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -c /var/www/debian/coot/coot/density-contour/CIsoSurface.cpp In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/density-contour/density-contour-triangles.cc:155: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/density-contour/CIsoSurface.cpp:1244: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -MF CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -c /var/www/debian/coot/coot/density-contour/occlusion.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -MF CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -c /var/www/debian/coot/coot/density-contour/gaussian-surface.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -c /var/www/debian/coot/coot/ccp4mg-utils/quat.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o -c /var/www/debian/coot/coot/ccp4mg-utils/mgtree.cc /var/www/debian/coot/coot/api/molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': /var/www/debian/coot/coot/api/molecules-container-ligand-fitting.cc:344:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 344 | auto p = coot::util::mean_and_variance(xmap); | ^ [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -c /var/www/debian/coot/coot/ccp4mg-utils/cartesian.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -c /var/www/debian/coot/coot/ccp4mg-utils/matrix.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -c /var/www/debian/coot/coot/ccp4mg-utils/geomutil.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/density-contour/gaussian-surface.cc:36: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -MF CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -c /var/www/debian/coot/coot/skeleton/dm-utils.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -MF CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -c /var/www/debian/coot/coot/skeleton/BuildCas.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -MF CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -c /var/www/debian/coot/coot/skeleton/graphical_skel.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/ideal/pepflip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -MF CMakeFiles/cootapi.dir/ideal/pepflip.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -c /var/www/debian/coot/coot/ideal/pepflip.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o -MF CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o.d -o CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o -c /var/www/debian/coot/coot/ideal/parallel-planes.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/ng.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/ng.cc.o -MF CMakeFiles/cootapi.dir/ideal/ng.cc.o.d -o CMakeFiles/cootapi.dir/ideal/ng.cc.o -c /var/www/debian/coot/coot/ideal/ng.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint.cc.o -c /var/www/debian/coot/coot/ideal/simple-restraint.cc In file included from /var/www/debian/coot/coot/ideal/parallel-planes.cc:22: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -MF CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -c /var/www/debian/coot/coot/ideal/torsion-bonds.cc In file included from /var/www/debian/coot/coot/ideal/parallel-planes.cc:23: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/simple-restraint.cc:50: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -MF CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -c /var/www/debian/coot/coot/ideal/chi-squareds.cc /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/torsion-bonds.cc:25: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -MF CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o.d -o CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -c /var/www/debian/coot/coot/ideal/trans-peptide.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -MF CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o.d -o CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -c /var/www/debian/coot/coot/ideal/model-bond-deltas.cc /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/ng.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/trans-peptide.cc:24: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -c /var/www/debian/coot/coot/ideal/make-restraints.cc /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/chi-squareds.cc:41: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/make-restraints.cc:43: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -c /var/www/debian/coot/coot/ideal/pull-restraint.cc [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/neutron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/neutron.cc.o -MF CMakeFiles/cootapi.dir/ideal/neutron.cc.o.d -o CMakeFiles/cootapi.dir/ideal/neutron.cc.o -c /var/www/debian/coot/coot/ideal/neutron.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/model-bond-deltas.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/model-bond-deltas.cc:29: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/pull-restraint.cc:34: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': /var/www/debian/coot/coot/ideal/ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -MF CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o.d -o CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -c /var/www/debian/coot/coot/ideal/coot-compare-residues.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -c /var/www/debian/coot/coot/ideal/link-restraints.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/neutron.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/mods.cc.o -MF CMakeFiles/cootapi.dir/ideal/mods.cc.o.d -o CMakeFiles/cootapi.dir/ideal/mods.cc.o -c /var/www/debian/coot/coot/ideal/mods.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/link-restraints.cc:30: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/mods.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -c /var/www/debian/coot/coot/ideal/extra-restraints-kk.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/coot-compare-residues.cc:24: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/chirals.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chirals.cc.o -MF CMakeFiles/cootapi.dir/ideal/chirals.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chirals.cc.o -c /var/www/debian/coot/coot/ideal/chirals.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/extra-restraints-kk.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -c /var/www/debian/coot/coot/ideal/extra-restraints.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/coot-coord-extras.hh:33, from /var/www/debian/coot/coot/ideal/chirals.cc:36: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/gradients.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/gradients.cc.o -MF CMakeFiles/cootapi.dir/ideal/gradients.cc.o.d -o CMakeFiles/cootapi.dir/ideal/gradients.cc.o -c /var/www/debian/coot/coot/ideal/gradients.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/extra-restraints.cc:30: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/gradients.cc:42: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -MF CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o.d -o CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -c /var/www/debian/coot/coot/ideal/regularize-minimol.cc In file included from /var/www/debian/coot/coot/ideal/chirals.cc:38: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/flanking.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/flanking.cc.o -MF CMakeFiles/cootapi.dir/ideal/flanking.cc.o.d -o CMakeFiles/cootapi.dir/ideal/flanking.cc.o -c /var/www/debian/coot/coot/ideal/flanking.cc /var/www/debian/coot/coot/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/distortion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/distortion.cc.o -MF CMakeFiles/cootapi.dir/ideal/distortion.cc.o.d -o CMakeFiles/cootapi.dir/ideal/distortion.cc.o -c /var/www/debian/coot/coot/ideal/distortion.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -c /var/www/debian/coot/coot/ideal/simple-restraint-kk.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/regularize-minimol.hh:27, from /var/www/debian/coot/coot/ideal/regularize-minimol.cc:24: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -MF CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o.d -o CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -c /var/www/debian/coot/coot/ideal/crankshaft.cc [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -MF CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -c /var/www/debian/coot/coot/ideal/phi-psi.cc [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/lograma.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -MF CMakeFiles/cootapi.dir/ideal/lograma.cpp.o.d -o CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -c /var/www/debian/coot/coot/ideal/lograma.cpp In file included from /var/www/debian/coot/coot/ideal/zo-rama.hh:42, from /var/www/debian/coot/coot/ideal/crankshaft.hh:37, from /var/www/debian/coot/coot/ideal/crankshaft.cc:30: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/flanking.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -MF CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o.d -o CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -c /var/www/debian/coot/coot/ideal/process-dfs-in-range.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -MF CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o.d -o CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -c /var/www/debian/coot/coot/ideal/zo-rama.cc In file included from /var/www/debian/coot/coot/ideal/crankshaft.cc:36: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/ideal/crankshaft.cc:37: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /var/www/debian/coot/coot/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /var/www/debian/coot/coot/ideal/crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ In file included from /var/www/debian/coot/coot/ideal/zo-rama.hh:42, from /var/www/debian/coot/coot/ideal/zo-rama.cc:29: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/distortion.cc:39: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/align-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/align-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/align-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/align-utils.cc.o -c /var/www/debian/coot/coot/utils/align-utils.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/simple-restraint-kk.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/process-dfs-in-range.cc:38: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -MF CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o.d -o CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -c /var/www/debian/coot/coot/utils/atomic-numbers.cc /var/www/debian/coot/coot/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /var/www/debian/coot/coot/ideal/crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ /var/www/debian/coot/coot/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /var/www/debian/coot/coot/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ In file included from /var/www/debian/coot/coot/utils/atomic-numbers.cc:22: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/backward.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/backward.cpp.o -MF CMakeFiles/cootapi.dir/utils/backward.cpp.o.d -o CMakeFiles/cootapi.dir/utils/backward.cpp.o -c /var/www/debian/coot/coot/utils/backward.cpp /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/colour-holder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -MF CMakeFiles/cootapi.dir/utils/colour-holder.cc.o.d -o CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -c /var/www/debian/coot/coot/utils/colour-holder.cc /var/www/debian/coot/coot/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -c /var/www/debian/coot/coot/utils/coot-fasta.cc In file included from /var/www/debian/coot/coot/utils/coot-fasta.cc:25: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -c /var/www/debian/coot/coot/utils/coot-utils.cc In file included from /var/www/debian/coot/coot/utils/coot-utils.cc:59: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/dodec.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/dodec.cc.o -MF CMakeFiles/cootapi.dir/utils/dodec.cc.o.d -o CMakeFiles/cootapi.dir/utils/dodec.cc.o -c /var/www/debian/coot/coot/utils/dodec.cc /var/www/debian/coot/coot/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /var/www/debian/coot/coot/ideal/crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ /var/www/debian/coot/coot/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /var/www/debian/coot/coot/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/radix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/radix.cc.o -MF CMakeFiles/cootapi.dir/utils/radix.cc.o.d -o CMakeFiles/cootapi.dir/utils/radix.cc.o -c /var/www/debian/coot/coot/utils/radix.cc [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -MF CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o.d -o CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -c /var/www/debian/coot/coot/utils/gdk-keysyms.cc In file included from /var/www/debian/coot/coot/utils/gdk-keysyms.cc:23: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -MF CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o.d -o CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -c /var/www/debian/coot/coot/utils/pir-alignment.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -MF CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o.d -o CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -c /var/www/debian/coot/coot/utils/hsv-rgb.cc In file included from /var/www/debian/coot/coot/utils/pir-alignment.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -MF CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o.d -o CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -c /var/www/debian/coot/coot/utils/setup-syminfo.cc In file included from /var/www/debian/coot/coot/utils/hsv-rgb.cc:29: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/split-indices.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/split-indices.cc.o -MF CMakeFiles/cootapi.dir/utils/split-indices.cc.o.d -o CMakeFiles/cootapi.dir/utils/split-indices.cc.o -c /var/www/debian/coot/coot/utils/split-indices.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/logging.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/logging.cc.o -MF CMakeFiles/cootapi.dir/utils/logging.cc.o.d -o CMakeFiles/cootapi.dir/utils/logging.cc.o -c /var/www/debian/coot/coot/utils/logging.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/threads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/threads.cc.o -MF CMakeFiles/cootapi.dir/utils/threads.cc.o.d -o CMakeFiles/cootapi.dir/utils/threads.cc.o -c /var/www/debian/coot/coot/utils/threads.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/win-compat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/win-compat.cc.o -MF CMakeFiles/cootapi.dir/utils/win-compat.cc.o.d -o CMakeFiles/cootapi.dir/utils/win-compat.cc.o -c /var/www/debian/coot/coot/utils/win-compat.cc In file included from /var/www/debian/coot/coot/utils/setup-syminfo.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 50%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-strands.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-strands.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -c /var/www/debian/coot/coot/db-main/db-strands.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -MF CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o.d -o CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -c /var/www/debian/coot/coot/high-res/coot-atom-graph.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -MF CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o.d -o CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -c /var/www/debian/coot/coot/high-res/residue-distortions.cc In file included from /var/www/debian/coot/coot/db-main/db-strands.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/utils/threads.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/high-res/coot-atom-graph.hh:27, from /var/www/debian/coot/coot/high-res/residue-distortions.cc:21: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/high-res/coot-atom-graph.hh:27, from /var/www/debian/coot/coot/high-res/coot-atom-graph.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -MF CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o.d -o CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -c /var/www/debian/coot/coot/high-res/sequence-assignment.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/high-res/high-res.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/high-res.cc.o -MF CMakeFiles/cootapi.dir/high-res/high-res.cc.o.d -o CMakeFiles/cootapi.dir/high-res/high-res.cc.o -c /var/www/debian/coot/coot/high-res/high-res.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -MF CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o.d -o CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -c /var/www/debian/coot/coot/pli/flev-annotations.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -MF CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o.d -o CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -c /var/www/debian/coot/coot/pli/protein-ligand-interactions.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -MF CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o.d -o CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -c /var/www/debian/coot/coot/pli/sdf-interface.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -c /var/www/debian/coot/coot/coot-utils/cmtz-interface.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -c /var/www/debian/coot/coot/coot-utils/lidia-core-functions.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -c /var/www/debian/coot/coot/coot-utils/atom-selection-container.cc In file included from /var/www/debian/coot/coot/coot-utils/atom-selection-container.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/high-res/high-res.cc:24: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/pli/sdf-interface.cc:147: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/high-res/sequence-assignment.cc:30: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/high-res/coot-atom-graph.hh:27, from /var/www/debian/coot/coot/high-res/high-res.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -c /var/www/debian/coot/coot/coot-utils/merge-atom-selections.cc In file included from /var/www/debian/coot/coot/coot-utils/atom-selection-container.cc:33: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-least-squares.cc In file included from /var/www/debian/coot/coot/coot-utils/merge-atom-selections.cc:34: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -c /var/www/debian/coot/coot/coot-utils/diff-diff-map-peaks.cc In file included from /var/www/debian/coot/coot/coot-utils/atom-selection-container.cc:915: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -c /var/www/debian/coot/coot/coot-utils/gltf-export.cc [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -c /var/www/debian/coot/coot/coot-utils/shiftfield.cpp In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /var/www/debian/coot/coot/coot-utils/shiftfield.h:31, from /var/www/debian/coot/coot/coot-utils/shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -c /var/www/debian/coot/coot/coot-utils/stack-and-pair.cc [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -c /var/www/debian/coot/coot/coot-utils/spherical-harmonics.cc [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -c /var/www/debian/coot/coot/coot-utils/peak-search-from-list.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -c /var/www/debian/coot/coot/coot-utils/helix-analysis.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -c /var/www/debian/coot/coot/coot-utils/segmap.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -c /var/www/debian/coot/coot/coot-utils/cablam-markup.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -c /var/www/debian/coot/coot/coot-utils/fib-sphere.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -c /var/www/debian/coot/coot/coot-utils/find-water-baddies.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -c /var/www/debian/coot/coot/coot-utils/blob-line.cc In file included from /var/www/debian/coot/coot/coot-utils/cablam-markup.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/coot-utils/blob-line.cc:27: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-coord-utils-glyco.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-coord-utils.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -c /var/www/debian/coot/coot/coot-utils/merge-molecules.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-coord-utils-glyco.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-coord-utils.cc:36: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-coord-extras.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/coot-utils/find-water-baddies.cc:29: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -c /var/www/debian/coot/coot/coot-utils/water-coordination.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-coord-extras.cc:32: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -c /var/www/debian/coot/coot/coot-utils/bonded-pairs.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -c /var/www/debian/coot/coot/coot-utils/c-beta-deviations.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -c /var/www/debian/coot/coot/coot-utils/atom-tools.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-rama.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-rama.cc:24: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -c /var/www/debian/coot/coot/coot-utils/secondary-structure-headers.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o -c /var/www/debian/coot/coot/coot-utils/helix-like.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o -c /var/www/debian/coot/coot/coot-utils/polar-atoms.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -c /var/www/debian/coot/coot/coot-utils/plane-utils.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-tree-extras.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-tree-extras.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-map-heavy.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -c /var/www/debian/coot/coot/coot-utils/jed-flip.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-heavy.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -c /var/www/debian/coot/coot/coot-utils/pepflip-using-difference-map.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -c /var/www/debian/coot/coot/coot-utils/atom-overlaps.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/coot-coord-extras.hh:33, from /var/www/debian/coot/coot/coot-utils/jed-flip.hh:32, from /var/www/debian/coot/coot/coot-utils/jed-flip.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/atom-overlaps.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/pepflip-using-difference-map.cc:28: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -c /var/www/debian/coot/coot/coot-utils/bricks.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -c /var/www/debian/coot/coot/coot-utils/mutate.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -c /var/www/debian/coot/coot/coot-utils/elastic.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc In file included from /var/www/debian/coot/coot/coot-utils/mutate.cc:676: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/elastic.cc:30: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-h-bonds.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:39: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:892:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 892 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:3761: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-coord-utils-nucleotides.cc In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:601:39: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:64, from /usr/include/c++/13/algorithm:60, from /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:23: /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:4335:45: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:4420:87: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/c++/13/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:4575:69: required from here /usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -c /var/www/debian/coot/coot/coot-utils/glyco-torsions.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-coord-utils-nucleotides.cc:25: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:892:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 892 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc: In lambda function: /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:4575:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4575 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -c /var/www/debian/coot/coot/coot-utils/fast-eigens.cc In file included from /var/www/debian/coot/coot/coot-utils/glyco-torsions.cc:43: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc: In lambda function: /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:4420:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4420 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-shelx-ins.cc /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc: In lambda function: /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:4575:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4575 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /var/www/debian/coot/coot/coot-utils/coot-shelx-ins.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -c /var/www/debian/coot/coot/coot-utils/contacts-by-bricks.cc In file included from /var/www/debian/coot/coot/coot-utils/contacts-by-bricks.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /var/www/debian/coot/coot/coot-utils/coot-map-utils.cc:892:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 892 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -c /var/www/debian/coot/coot/coot-utils/lsq-improve.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/trim.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/trim.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -c /var/www/debian/coot/coot/coot-utils/trim.cc /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -c /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/coot-utils/trim.cc:21: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-fffear.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/coot-map-heavy.hh:30, from /var/www/debian/coot/coot/coot-utils/coot-fffear.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /var/www/debian/coot/coot/coot-utils/coot_shiftfield.h:31, from /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:153:81: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:209:29: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /var/www/debian/coot/coot/coot-utils/coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': /var/www/debian/coot/coot/coot-utils/coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -c /var/www/debian/coot/coot/coot-utils/coot-coord-lsq.cc /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -c /var/www/debian/coot/coot/coot-utils/strand-fragments.cc In file included from /var/www/debian/coot/coot/coot-utils/coot-coord-lsq.cc:23: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -c /var/www/debian/coot/coot/coot-utils/bonded-atoms.cc [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -c /var/www/debian/coot/coot/coot-utils/fragment-container.cc [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/positron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/positron.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -c /var/www/debian/coot/coot/coot-utils/positron.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -c /var/www/debian/coot/coot/coot-utils/maps-spherical.cc In file included from /var/www/debian/coot/coot/coot-utils/positron.cc:32: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -c /var/www/debian/coot/coot/coot-utils/peak-search.cc In file included from /var/www/debian/coot/coot/coot-utils/maps-spherical.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -c /var/www/debian/coot/coot/coot-utils/xmap-stats.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -c /var/www/debian/coot/coot/coot-utils/sfcalc-genmap.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -c /var/www/debian/coot/coot/coot-utils/reduce.cc /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /var/www/debian/coot/coot/coot-utils/coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ In file included from /var/www/debian/coot/coot/coot-utils/reduce.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -c /var/www/debian/coot/coot/coot-utils/contact-info.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/hole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/hole.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -c /var/www/debian/coot/coot/coot-utils/hole.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /var/www/debian/coot/coot/coot-utils/sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -c /var/www/debian/coot/coot/coot-utils/slurp-map.cc In file included from /var/www/debian/coot/coot/coot-utils/hole.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -c /var/www/debian/coot/coot/coot-utils/read-sm-cif.cc /var/www/debian/coot/coot/coot-utils/hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': /var/www/debian/coot/coot/coot-utils/hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from /var/www/debian/coot/coot/coot-utils/slurp-map.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -c /var/www/debian/coot/coot/coot-utils/exp-fit.cc In file included from /var/www/debian/coot/coot/coot-utils/read-sm-cif.cc:43: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from /var/www/debian/coot/coot/coot-utils/read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /var/www/debian/coot/coot/coot-utils/read-sm-cif.cc:1096:38: required from here /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -c /var/www/debian/coot/coot/coot-utils/cylinder.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -c /var/www/debian/coot/coot/coot-utils/cylinder-with-rotation-translation.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -c /var/www/debian/coot/coot/coot-utils/prideout-octasphere.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/oct.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/oct.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -c /var/www/debian/coot/coot/coot-utils/oct.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -c /var/www/debian/coot/coot/coot-utils/shapes.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -c /var/www/debian/coot/coot/coot-utils/simple-mesh.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -c /var/www/debian/coot/coot/coords/phenix-geo-bonds.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -c /var/www/debian/coot/coot/coords/Bond_lines_ext.cc In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/coords/phenix-geo-bonds.cc:25: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -c /var/www/debian/coot/coot/coords/mmdb-crystal.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/utils.cc.o -MF CMakeFiles/cootapi.dir/coords/utils.cc.o.d -o CMakeFiles/cootapi.dir/coords/utils.cc.o -c /var/www/debian/coot/coot/coords/utils.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -c /var/www/debian/coot/coot/coords/phenix-geo.cc In file included from /var/www/debian/coot/coot/coords/phenix-geo.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb.cc.o -c /var/www/debian/coot/coot/coords/mmdb.cc In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/coords/mmdb-crystal.cc:48: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/coords/mmdb-crystal.cc:50: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/coords/mmdb.cc:43: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/coords/mmdb.cc:46: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/Cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -MF CMakeFiles/cootapi.dir/coords/Cartesian.cc.o.d -o CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -c /var/www/debian/coot/coot/coords/Cartesian.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/loop-path.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/loop-path.cc.o -MF CMakeFiles/cootapi.dir/coords/loop-path.cc.o.d -o CMakeFiles/cootapi.dir/coords/loop-path.cc.o -c /var/www/debian/coot/coot/coords/loop-path.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/coot-close.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/coot-close.cc.o -MF CMakeFiles/cootapi.dir/coords/coot-close.cc.o.d -o CMakeFiles/cootapi.dir/coords/coot-close.cc.o -c /var/www/debian/coot/coot/coords/coot-close.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/cos-sin.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -MF CMakeFiles/cootapi.dir/coords/cos-sin.cc.o.d -o CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -c /var/www/debian/coot/coot/coords/cos-sin.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -MF CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o.d -o CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -c /var/www/debian/coot/coot/coords/rotamer-markup.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -c /var/www/debian/coot/coot/coords/mmdb-extras.cc In file included from /var/www/debian/coot/coot/coords/rotamer-markup.cc:29: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 76%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -c /var/www/debian/coot/coot/coords/Bond_lines.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -c /var/www/debian/coot/coot/geometry/cif-parse-link.cc In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/coords/Bond_lines.cc:36: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -c /var/www/debian/coot/coot/geometry/cif-parse.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/main-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -MF CMakeFiles/cootapi.dir/geometry/main-chain.cc.o.d -o CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -c /var/www/debian/coot/coot/geometry/main-chain.cc In file included from /var/www/debian/coot/coot/coords/Bond_lines.cc:41: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/geometry/cif-parse-link.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -c /var/www/debian/coot/coot/geometry/cif-parse-mon-lib.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -c /var/www/debian/coot/coot/geometry/protein-geometry.cc In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/coords/mmdb-extras.cc:35: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/geometry/cif-parse-mon-lib.cc:25: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -MF CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -c /var/www/debian/coot/coot/geometry/dictionary-residue.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -c /var/www/debian/coot/coot/geometry/dict-utils.cc In file included from /var/www/debian/coot/coot/geometry/cif-parse.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/geometry/dictionary-residue.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/geometry/dict-utils.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/geometry/protein-geometry.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -MF CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o.d -o CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -c /var/www/debian/coot/coot/geometry/read-sbase.cc [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -MF CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o.d -o CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -c /var/www/debian/coot/coot/geometry/hydrophobic.cc In file included from /var/www/debian/coot/coot/geometry/read-sbase.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -c /var/www/debian/coot/coot/geometry/energy-lib.cc In file included from /var/www/debian/coot/coot/geometry/energy-lib.cc:29: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -MF CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o.d -o CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -c /var/www/debian/coot/coot/geometry/srs-interface.cc In file included from /var/www/debian/coot/coot/geometry/srs-interface.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o -MF CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o.d -o CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o -c /var/www/debian/coot/coot/geometry/residue-and-atom-specs.cc In file included from /var/www/debian/coot/coot/geometry/residue-and-atom-specs.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -c /var/www/debian/coot/coot/geometry/protein-geometry-mmdb.cc [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -c /var/www/debian/coot/coot/geometry/mol-utils.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/dreiding.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -MF CMakeFiles/cootapi.dir/geometry/dreiding.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -c /var/www/debian/coot/coot/geometry/dreiding.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -MF CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o.d -o CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -c /var/www/debian/coot/coot/geometry/chem_mods.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/link.cc.o -MF CMakeFiles/cootapi.dir/geometry/link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/link.cc.o -c /var/www/debian/coot/coot/geometry/link.cc In file included from /var/www/debian/coot/coot/geometry/chem_mods.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -MF CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o.d -o CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -c /var/www/debian/coot/coot/geometry/lbg-graph.cc In file included from /var/www/debian/coot/coot/geometry/link.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -MF CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o.d -o CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -c /var/www/debian/coot/coot/geometry/glyco-tools.cc [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -MF CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o.d -o CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -c /var/www/debian/coot/coot/geometry/mol-utils-2.cc [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o -c /var/www/debian/coot/coot/geometry/protein-donor-acceptors.cc In file included from /var/www/debian/coot/coot/geometry/glyco-tools.cc:35: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 82%] Building CXX object CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -MF CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o.d -o CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -c /var/www/debian/coot/coot/geometry/intercept-3GP.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -MF CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o.d -o CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -c /var/www/debian/coot/coot/build/CalphaBuild.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -c /var/www/debian/coot/coot/mini-mol/mini-mol-utils.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/mini-mol/mini-mol-utils.hh:22, from /var/www/debian/coot/coot/mini-mol/mini-mol-utils.cc:22: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -c /var/www/debian/coot/coot/mini-mol/mini-mol.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/mini-mol/mini-mol.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -c /var/www/debian/coot/coot/mini-mol/atom-quads.cc [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -c /var/www/debian/coot/coot/cootilus/cootilus-build.cpp /var/www/debian/coot/coot/mini-mol/mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': /var/www/debian/coot/coot/mini-mol/mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -c /var/www/debian/coot/coot/cootilus/nautilus-join.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o -c /var/www/debian/coot/coot/cootilus/nautilus-ss-find.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-target.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-target.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-target.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-target.cpp.o -c /var/www/debian/coot/coot/cootilus/nautilus-target.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o -c /var/www/debian/coot/coot/cootilus/nautilus-tools.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o -c /var/www/debian/coot/coot/cootilus/nucleicacid_db.cpp [ 85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lbg-shared.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/lbg-shared.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/lbg-shared.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/lbg-shared.cc.o -c /var/www/debian/coot/coot/lidia-core/lbg-shared.cc [ 85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lbg-molfile.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/lbg-molfile.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/lbg-molfile.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/lbg-molfile.cc.o -c /var/www/debian/coot/coot/lidia-core/lbg-molfile.cc [ 85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o -c /var/www/debian/coot/coot/lidia-core/lig-build.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -c /var/www/debian/coot/coot/lidia-core/get-residue.cc In file included from /var/www/debian/coot/coot/lidia-core/lig-build.cc:25: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/lidia-core/lbg-molfile.cc:27: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -c /var/www/debian/coot/coot/angles/AngleInfo-angle-torsions-autogen.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -c /var/www/debian/coot/coot/angles/AngleInfo-theta_2-autogen.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o -c /var/www/debian/coot/coot/angles/AngleInfo.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/dipole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dipole.cc.o -MF CMakeFiles/cootapi.dir/ligand/dipole.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dipole.cc.o -c /var/www/debian/coot/coot/ligand/dipole.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -c /var/www/debian/coot/coot/ligand/chi-angles.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -MF CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o.d -o CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -c /var/www/debian/coot/coot/ligand/monomer-utils.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -c /var/www/debian/coot/coot/ligand/ligand-score-card.cc In file included from /var/www/debian/coot/coot/ligand/dipole.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -c /var/www/debian/coot/coot/ligand/chi-angles-autogen.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand.cc.o -c /var/www/debian/coot/coot/ligand/ligand.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand-score-card.hh:31, from /var/www/debian/coot/coot/ligand/ligand-score-card.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -MF CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o.d -o CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -c /var/www/debian/coot/coot/ligand/helix-placement.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -c /var/www/debian/coot/coot/ligand/backrub-rotamer.cc In file included from /var/www/debian/coot/coot/ligand/backrub-rotamer.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/ligand.cc:60: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/coot-coord-extras.hh:33, from /var/www/debian/coot/coot/ligand/chi-angles.cc:23: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -MF CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -c /var/www/debian/coot/coot/ligand/dunbrack.cc [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -c /var/www/debian/coot/coot/ligand/primitive-chi-angles.cc /var/www/debian/coot/coot/ligand/backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': /var/www/debian/coot/coot/ligand/backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ In file included from /var/www/debian/coot/coot/ligand/dunbrack.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/ligand/ligand.cc:69: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/ligand/ligand.cc:72: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/residue_by_phi_psi.hh:37, from /var/www/debian/coot/coot/ligand/helix-placement.cc:43: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -c /var/www/debian/coot/coot/ligand/rotamer-tables.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -c /var/www/debian/coot/coot/ligand/side-chain-densities.cc In file included from /var/www/debian/coot/coot/ligand/rotamer-tables.cc:31: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /var/www/debian/coot/coot/ligand/ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -c /var/www/debian/coot/coot/ligand/richardson-rotamers.cc In file included from /var/www/debian/coot/coot/ligand/side-chain-densities.cc:38: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -c /var/www/debian/coot/coot/ligand/ligands-db.cc [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -c /var/www/debian/coot/coot/ligand/ligand-extras.cc /var/www/debian/coot/coot/ligand/side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': /var/www/debian/coot/coot/ligand/side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -MF CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o.d -o CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -c /var/www/debian/coot/coot/ligand/residue_by_phi_psi.cc In file included from /var/www/debian/coot/coot/ligand/ligand-extras.cc:36: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ligand/side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': /var/www/debian/coot/coot/ligand/side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/residue_by_phi_psi.hh:37, from /var/www/debian/coot/coot/ligand/residue_by_phi_psi.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ligand/ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': /var/www/debian/coot/coot/ligand/ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -MF CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o.d -o CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -c /var/www/debian/coot/coot/ligand/base-pairing.cc /var/www/debian/coot/coot/ligand/side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': /var/www/debian/coot/coot/ligand/side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -MF CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -c /var/www/debian/coot/coot/ligand/ideal-rna.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -c /var/www/debian/coot/coot/ligand/wiggly-ligand.cc /var/www/debian/coot/coot/ligand/side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': /var/www/debian/coot/coot/ligand/side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, | ^~~~ [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -MF CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o.d -o CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -c /var/www/debian/coot/coot/ligand/torsion-general.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o -MF CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o.d -o CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o -c /var/www/debian/coot/coot/ligand/joining-residues.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -c /var/www/debian/coot/coot/ligand/richardson-rotamer.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -c /var/www/debian/coot/coot/ligand/side-chain.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/residue_by_phi_psi.hh:37, from /var/www/debian/coot/coot/ligand/joining-residues.cc:27: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ligand/side-chain.cc:28: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -MF CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -c /var/www/debian/coot/coot/ligand/rigid-body.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -MF CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o.d -o CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -c /var/www/debian/coot/coot/ligand/smith-waterman.cc In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:162, from /var/www/debian/coot/coot/ideal/regularize-minimol.hh:27, from /var/www/debian/coot/coot/ligand/wiggly-ligand.cc:26: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -MF CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o.d -o CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -c /var/www/debian/coot/coot/ligand/tube-finder.cc [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -MF CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o.d -o CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -c /var/www/debian/coot/coot/ligand/fast-ss-search.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/rigid-body.hh:25, from /var/www/debian/coot/coot/ligand/rigid-body.cc:23: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ligand/tube-finder.cc:30: /var/www/debian/coot/coot/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /var/www/debian/coot/coot/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -c /var/www/debian/coot/coot/ligand/rotamer.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/mini-mol/mini-mol-utils.hh:22, from /var/www/debian/coot/coot/ligand/fast-ss-search.cc:43: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /var/www/debian/coot/coot/ligand/tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': /var/www/debian/coot/coot/ligand/tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ In file included from /var/www/debian/coot/coot/ligand/rotamer.cc:33: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 95%] Building CXX object CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -MF CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o.d -o CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -c /var/www/debian/coot/coot/src/coot-nomenclature.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-main.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-main.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-main.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-main.cc.o -c /var/www/debian/coot/coot/db-main/db-main.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD 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-I/var/www/debian/coot/coot/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -MF CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -c /var/www/debian/coot/coot/api/test-molecules-container.cc make[4]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' make[4]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' make[4]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' [ 97%] Building CXX object CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o [ 97%] Building CXX object CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o [ 97%] Building CXX object CMakeFiles/findligand.dir/ligand/find-ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -c /var/www/debian/coot/coot/api/filo-tests.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -I/var/www/debian/coot/coot -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/findligand.dir/ligand/find-ligand.cc.o -MF CMakeFiles/findligand.dir/ligand/find-ligand.cc.o.d -o CMakeFiles/findligand.dir/ligand/find-ligand.cc.o -c /var/www/debian/coot/coot/ligand/find-ligand.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -Dchapi_EXPORTS -I/var/www/debian/coot/coot -I/var/www/debian/coot/coot/coords -I/var/www/debian/coot/coot/utils -I/var/www/debian/coot/coot/ccp4mg-utils -I/var/www/debian/coot/coot/ccp4mg-utils/util -I/var/www/debian/coot/coot/ccp4mg-utils/pygl -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -MF CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o.d -o CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -c /var/www/debian/coot/coot/api/molecules-container-nanobind.cc [ 97%] Building CXX object CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DVERSION=\"1.x-pre\" -DXDATADIR=\"/usr/share\" -I/var/www/debian/coot/coot -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o -MF CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o.d -o CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o -c /var/www/debian/coot/coot/ideal/mini-rsr.cc In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/ligand/ligand.hh:32, from /var/www/debian/coot/coot/ligand/find-waters.cc:45: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ligand/find-ligand.cc:46: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/lucrezia-tests.hh:2, from /var/www/debian/coot/coot/api/lucrezia-tests.cc:2: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/filo-tests.hh:23, from /var/www/debian/coot/coot/api/filo-tests.cc:22: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/test-molecules-container.cc:7: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/ideal/mini-rsr.cc:56: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 97%] Linking CXX executable findwaters /usr/bin/cmake -E cmake_link_script CMakeFiles/findwaters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro "CMakeFiles/findwaters.dir/ligand/find-waters.cc.o" -o findwaters -Wl,-rpath,/var/www/debian/coot/coot/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/mini-mol/mini-mol.hh:29, from /var/www/debian/coot/coot/coot-utils/atom-tree.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:41, from /var/www/debian/coot/coot/api/molecules-container.hh:19, from /var/www/debian/coot/coot/api/molecules-container-nanobind.cc:9: /var/www/debian/coot/coot/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /var/www/debian/coot/coot/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /var/www/debian/coot/coot/lidia-core/lbg-molfile.hh:32, from /var/www/debian/coot/coot/coords/mmdb.hh:27, from /var/www/debian/coot/coot/ideal/mini-rsr.cc:58: /var/www/debian/coot/coot/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /var/www/debian/coot/coot/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ make[4]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' [ 97%] Built target findwaters In file included from /var/www/debian/coot/coot/api/coot-molecule.hh:45: /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/api/coot-molecule.hh:69: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /var/www/debian/coot/coot/ideal/simple-restraint.hh:174, from /var/www/debian/coot/coot/ideal/mini-rsr.cc:60: /var/www/debian/coot/coot/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /var/www/debian/coot/coot/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ /var/www/debian/coot/coot/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /var/www/debian/coot/coot/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /var/www/debian/coot/coot/coot-utils/coot-map-utils.hh:33, from /var/www/debian/coot/coot/ideal/mini-rsr.cc:66: /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /var/www/debian/coot/coot/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /var/www/debian/coot/coot/ideal/mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 98%] Linking CXX executable findligand /usr/bin/cmake -E cmake_link_script CMakeFiles/findligand.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro "CMakeFiles/findligand.dir/ligand/find-ligand.cc.o" -o findligand -Wl,-rpath,/var/www/debian/coot/coot/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' [ 98%] Built target findligand [ 99%] Linking CXX executable coot-mini-rsr /usr/bin/cmake -E cmake_link_script CMakeFiles/coot-mini-rsr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro "CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o" -o coot-mini-rsr -Wl,-rpath,/var/www/debian/coot/coot/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' [ 99%] Built target coot-mini-rsr [ 99%] Linking CXX shared module chapi.cpython-311-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/chapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -o chapi.cpython-311-aarch64-linux-gnu.so "CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o" -Wl,-rpath,/var/www/debian/coot/coot/obj-aarch64-linux-gnu: libnanobind-static.a libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' [ 99%] Built target chapi [100%] Linking CXX executable test-molecules-container /usr/bin/cmake -E cmake_link_script CMakeFiles/test-molecules-container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro "CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o" "CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o" "CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o" -o test-molecules-container -Wl,-rpath,/var/www/debian/coot/coot/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libssm.so /usr/lib/aarch64-linux-gnu/libclipper-minimol.so /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so /usr/lib/aarch64-linux-gnu/libclipper-cif.so /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libclipper-contrib.so /usr/lib/libsfftw.so /usr/lib/libsrfftw.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libgsl.so /usr/lib/aarch64-linux-gnu/libgslcblas.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' [100%] Built target test-molecules-container make[3]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /var/www/debian/coot/coot/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' make[1]: Leaving directory '/var/www/debian/coot/coot' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/var/www/debian/coot/coot' dh_auto_install make -j1 install DESTDIR=/var/www/debian/coot/coot/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/var/www/debian/coot/coot' Making install in auxil make[3]: Entering directory '/var/www/debian/coot/coot/auxil' Making install in catcheck make[4]: Entering directory '/var/www/debian/coot/coot/auxil/catcheck' make[5]: Entering directory '/var/www/debian/coot/coot/auxil/catcheck' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/auxil/catcheck' make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/catcheck' Making install in rama make[4]: Entering directory '/var/www/debian/coot/coot/auxil/rama' make[5]: Entering directory '/var/www/debian/coot/coot/auxil/rama' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/auxil/rama' make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/rama' Making install in sec-str make[4]: Entering directory '/var/www/debian/coot/coot/auxil/sec-str' make[5]: Entering directory '/var/www/debian/coot/coot/auxil/sec-str' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/auxil/sec-str' make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/sec-str' Making install in strand-analysis make[4]: Entering directory '/var/www/debian/coot/coot/auxil/strand-analysis' make[5]: Entering directory '/var/www/debian/coot/coot/auxil/strand-analysis' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/auxil/strand-analysis' make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/strand-analysis' Making install in vectors make[4]: Entering directory '/var/www/debian/coot/coot/auxil/vectors' make[5]: Entering directory '/var/www/debian/coot/coot/auxil/vectors' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/auxil/vectors' make[4]: Leaving directory '/var/www/debian/coot/coot/auxil/vectors' make[4]: Entering directory '/var/www/debian/coot/coot/auxil' make[5]: Entering directory '/var/www/debian/coot/coot/auxil' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/auxil' make[4]: Leaving directory '/var/www/debian/coot/coot/auxil' make[3]: Leaving directory '/var/www/debian/coot/coot/auxil' Making install in scheme make[3]: Entering directory '/var/www/debian/coot/coot/scheme' make[4]: Entering directory '/var/www/debian/coot/coot/scheme' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm 3d-generator-import.scm gui-hole.scm gui-prosmart.scm get-recent-pdbe.scm json-reader.scm jligand.scm jligand-gui.scm redefine-functions.scm user-define-restraints.scm template-key-bindings.scm gui-add-linked-cho.scm ligand-check.scm run-mogul.scm contact-score-isolated-ligand.scm enhanced-ligand.scm gui-ligand-sliders.scm dictionary-generators.scm cho-restraints-from-models.scm interactive-nudge-residues.scm acedrg-link.scm add-linked-cho.scm find-baddies.scm sharpen-blur.scm dynamic-atom-overlaps-and-other-outliers.scm '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/scheme' make[4]: Leaving directory '/var/www/debian/coot/coot/scheme' make[3]: Leaving directory '/var/www/debian/coot/coot/scheme' Making install in python make[3]: Entering directory '/var/www/debian/coot/coot/python' make[4]: Entering directory '/var/www/debian/coot/coot/python' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[4]: Leaving directory '/var/www/debian/coot/coot/python' make[3]: Leaving directory '/var/www/debian/coot/coot/python' Making install in pdb-templates make[3]: Entering directory '/var/www/debian/coot/coot/pdb-templates' make[4]: Entering directory '/var/www/debian/coot/coot/pdb-templates' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 ASN-NAG-via-NAG-ASN.pdb pyranose-pyranose-via-BETA1-4.pdb pyranose-pyranose-via-ALPHA1-2.pdb pyranose-pyranose-via-ALPHA1-3.pdb pyranose-pyranose-via-ALPHA1-6.pdb SIA-pyranose-via-ALPHA2-3.pdb link-by-torsion-to-pyranose-core-ALPHA1-2.tab link-by-torsion-to-pyranose-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-2.tab link-by-torsion-to-FUC-core-ALPHA1-6.tab link-by-torsion-to-NAG-core-NAG-SER.tab link-by-torsion-to-pyranose-core-ALPHA1-6.tab link-by-torsion-to-pyranose-core-ALPHA2-3.tab link-by-torsion-to-pyranose-core-BETA1-2.tab link-by-torsion-to-pyranose-core-BETA1-3.tab link-by-torsion-to-pyranose-core-BETA1-4.tab link-by-torsion-to-pyranose-core-BETA1-6.tab link-by-torsion-to-pyranose-core-NAG-ASN.tab link-by-torsion-to-pyranose-core-XYP-BMA.tab NAG-decorations.tab BMA-decorations.tab MAN-decorations.tab GLC-decorations.tab GAL-decorations.tab FUC-decorations.tab FUL-decorations.tab XYP-decorations.tab theor-helix-70.pdb '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' make[4]: Leaving directory '/var/www/debian/coot/coot/pdb-templates' make[3]: Leaving directory '/var/www/debian/coot/coot/pdb-templates' Making install in macros make[3]: Entering directory '/var/www/debian/coot/coot/macros' make[4]: Entering directory '/var/www/debian/coot/coot/macros' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/www/debian/coot/coot/macros' make[3]: Leaving directory '/var/www/debian/coot/coot/macros' Making install in compat make[3]: Entering directory '/var/www/debian/coot/coot/compat' make[4]: Entering directory '/var/www/debian/coot/coot/compat' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-compat.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so.0 || { rm -f libcoot-compat.so.0 && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so || { rm -f libcoot-compat.so && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-compat.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/compat' /usr/bin/install -c -m 644 coot-getopt.h coot-sysdep.h getopt_int.h sleep-fixups.h dirent.h '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/compat' make[4]: Leaving directory '/var/www/debian/coot/coot/compat' make[3]: Leaving directory '/var/www/debian/coot/coot/compat' Making install in utils make[3]: Entering directory '/var/www/debian/coot/coot/utils' make[4]: Entering directory '/var/www/debian/coot/coot/utils' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-utils.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so.0 || { rm -f libcoot-utils.so.0 && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so || { rm -f libcoot-utils.so && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-utils.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/utils' /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh dodec.hh win-compat.hh ctpl_stl.h ctpl.h pir-alignment.hh align-utils.hh split-indices.hh radix.hh logging.hh insertion-sort.hh backward.hpp colour-holder.hh setup-syminfo.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/utils' make[4]: Leaving directory '/var/www/debian/coot/coot/utils' make[3]: Leaving directory '/var/www/debian/coot/coot/utils' Making install in protein_db make[3]: Entering directory '/var/www/debian/coot/coot/protein_db' make[4]: Entering directory '/var/www/debian/coot/coot/protein_db' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0 || { rm -f libcoot-protein-db.so.0 && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so || { rm -f libcoot-protein-db.so && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/protein_db' /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/protein_db' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/protein_db' /usr/bin/install -c -m 644 protein.db '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/protein_db' make[4]: Leaving directory '/var/www/debian/coot/coot/protein_db' make[3]: Leaving directory '/var/www/debian/coot/coot/protein_db' Making install in mini-mol make[3]: Entering directory '/var/www/debian/coot/coot/mini-mol' make[4]: Entering directory '/var/www/debian/coot/coot/mini-mol' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-mini-mol.la' libtool: install: (cd /var/www/debian/coot/coot/mini-mol; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0 || { rm -f libcoot-mini-mol.so.0 && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so || { rm -f libcoot-mini-mol.so && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/mini-mol' /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/mini-mol' make[4]: Leaving directory '/var/www/debian/coot/coot/mini-mol' make[3]: Leaving directory '/var/www/debian/coot/coot/mini-mol' Making install in geometry make[3]: Entering directory '/var/www/debian/coot/coot/geometry' make[4]: Entering directory '/var/www/debian/coot/coot/geometry' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-geometry.la' libtool: install: (cd /var/www/debian/coot/coot/geometry; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-utils -lcoot-compat -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-geometry.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so.0 || { rm -f libcoot-geometry.so.0 && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so || { rm -f libcoot-geometry.so && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-geometry.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/geometry' /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh srs-interface.hh dict-utils.hh dict-mismatches.hh energy-lib.hh match-results.hh hb-types.hh main-chain.hh residue-and-atom-specs.hh chem_mods.hh mol-utils.hh mol-utils-2.hh bonded-quad.hh hydrophobic.hh metal-ligand.hh pdbe-chem-comp-atom-depiction.hh pdbx-chem-comp-description-generator.hh gphl-chem-comp-info.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/geometry' make[4]: Leaving directory '/var/www/debian/coot/coot/geometry' make[3]: Leaving directory '/var/www/debian/coot/coot/geometry' Making install in lidia-core make[3]: Entering directory '/var/www/debian/coot/coot/lidia-core' make[4]: Entering directory '/var/www/debian/coot/coot/lidia-core' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-lidia-core.la' libtool: install: (cd /var/www/debian/coot/coot/lidia-core; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0 || { rm -f libcoot-lidia-core.so.0 && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so || { rm -f libcoot-lidia-core.so && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/lidia-core' /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh rdkit-interface.hh use-rdkit.hh cod-types.hh neighbour-sorter.hh bond-record-container-t.hh bond-table-record-t.hh cod-atom-types.hh cod-atom-type-t.hh primes.hh chemical-feature-clusters.hh third-neighbour-info-t.hh get-residue.hh svg-molecule.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/lidia-core' make[4]: Leaving directory '/var/www/debian/coot/coot/lidia-core' make[3]: Leaving directory '/var/www/debian/coot/coot/lidia-core' Making install in coot-utils make[3]: Entering directory '/var/www/debian/coot/coot/coot-utils' make[4]: Entering directory '/var/www/debian/coot/coot/coot-utils' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coord-utils.la' libtool: install: (cd /var/www/debian/coot/coot/coot-utils; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo positron.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/positron.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-lidia-core -lcoot-protein-db -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0 || { rm -f libcoot-coord-utils.so.0 && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so || { rm -f libcoot-coord-utils.so && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.la libtool: warning: relinking 'libcoot-coord-extras.la' libtool: install: (cd /var/www/debian/coot/coot/coot-utils; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0 || { rm -f libcoot-coord-extras.so.0 && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so || { rm -f libcoot-coord-extras.so && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.la libtool: warning: relinking 'libcoot-map-utils.la' libtool: install: (cd /var/www/debian/coot/coot/coot-utils; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lpthread -lz -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0 || { rm -f libcoot-map-utils.so.0 && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so || { rm -f libcoot-map-utils.so && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.la libtool: warning: relinking 'libcoot-map-heavy.la' libtool: install: (cd /var/www/debian/coot/coot/coot-utils; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0 || { rm -f libcoot-map-heavy.so.0 && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so || { rm -f libcoot-map-heavy.so && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c mmrrcc '/var/www/debian/coot/coot/debian/tmp/usr/bin' libtool: warning: './libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: './libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mmrrcc /var/www/debian/coot/coot/debian/tmp/usr/bin/mmrrcc /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh coot-hole.hh read-sm-cif.hh bonded-pairs.hh tree.hh helix-analysis.hh elastic.hh emma.hh glyco-torsions.hh coot-least-squares.hh coot-density-stats.hh atom-overlaps.hh reduce.hh atom-selection-container.hh contact-info.hh plane-utils.hh secondary-structure-headers.hh c-beta-deviations.hh jed-flip.hh lidia-core-functions.hh bonded-atoms.hh spherical-harmonics.hh helix-like.hh merge-atom-selections.hh contacts-by-bricks.hh amp-reso.hh stack-and-pair.hh atom-tools.hh segmap.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 fast-eigens.hh strand-fragments.hh sfcalc-genmap.hh cablam-markup.hh slurp-map.hh merge-molecules.hh arc-info.hh exp-fit.hh coot_shiftfield.h shiftfield.h fib-sphere.hh cis-peptide-info.hh pepflip-using-difference-map.hh blob-line.hh shape-types.hh shapes.hh polar-atoms.hh 3d-texture.hh fragment-container.hh map-index.hh atom-tree.hh jed-flip.hh atom-vertex.hh merge-C-and-N-terminii.hh simple-mesh.hh vertex.hh g_triangle.hh cylinder.hh cylinder-with-rotation-translation.hh oct.hh prideout-octasphere.hh cmtz-interface.hh mtz-column-auto-read.hh pugixml.hpp pugiconfig.hpp find-water-baddies.hh voidp-buffer.hh parse-pisa.hh diff-diff-map-peaks.hh tiny_gltf.h '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 json.hpp stb_image.h stb_image_write.h glyco-tree.hh positron.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/coot-utils' make[4]: Leaving directory '/var/www/debian/coot/coot/coot-utils' make[3]: Leaving directory '/var/www/debian/coot/coot/coot-utils' Making install in angles make[3]: Entering directory '/var/www/debian/coot/coot/angles' make[4]: Entering directory '/var/www/debian/coot/coot/angles' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0 || { rm -f libcoot-AngleInfo.so.0 && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so || { rm -f libcoot-AngleInfo.so && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/angles' /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/angles' make[4]: Leaving directory '/var/www/debian/coot/coot/angles' make[3]: Leaving directory '/var/www/debian/coot/coot/angles' Making install in ccp4mg-utils make[3]: Entering directory '/var/www/debian/coot/coot/ccp4mg-utils' make[4]: Entering directory '/var/www/debian/coot/coot/ccp4mg-utils' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0 || { rm -f libccp4mg-utils.so.0 && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so || { rm -f libccp4mg-utils.so && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/ccp4mg-utils' /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/ccp4mg-utils' make[4]: Leaving directory '/var/www/debian/coot/coot/ccp4mg-utils' make[3]: Leaving directory '/var/www/debian/coot/coot/ccp4mg-utils' Making install in db-main make[3]: Entering directory '/var/www/debian/coot/coot/db-main' make[4]: Entering directory '/var/www/debian/coot/coot/db-main' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-db-main.la' libtool: install: (cd /var/www/debian/coot/coot/db-main; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/db-main.o .libs/db-strands.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-lidia-core -lcoot-coord-utils -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-db-main.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so.0 || { rm -f libcoot-db-main.so.0 && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so || { rm -f libcoot-db-main.so && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-db-main.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/db-main' /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/db-main' make[4]: Leaving directory '/var/www/debian/coot/coot/db-main' make[3]: Leaving directory '/var/www/debian/coot/coot/db-main' Making install in analysis make[3]: Entering directory '/var/www/debian/coot/coot/analysis' make[4]: Entering directory '/var/www/debian/coot/coot/analysis' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-analysis.la' libtool: install: (cd /var/www/debian/coot/coot/analysis; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-analysis.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so.0 || { rm -f libcoot-analysis.so.0 && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so || { rm -f libcoot-analysis.so && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bfactan '/var/www/debian/coot/coot/debian/tmp/usr/bin' libtool: warning: 'libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-bfactan /var/www/debian/coot/coot/debian/tmp/usr/bin/coot-bfactan /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/analysis' /usr/bin/install -c -m 644 bfkurt.hh mogul-interface.hh stats.hh daca.hh rna-backbone.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/analysis' make[4]: Leaving directory '/var/www/debian/coot/coot/analysis' make[3]: Leaving directory '/var/www/debian/coot/coot/analysis' Making install in cootaneer make[3]: Entering directory '/var/www/debian/coot/coot/cootaneer' make[4]: Entering directory '/var/www/debian/coot/coot/cootaneer' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootaneer.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so.0 || { rm -f libcootaneer.so.0 && ln -s libcootaneer.so.0.0.0 libcootaneer.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so || { rm -f libcootaneer.so && ln -s libcootaneer.so.0.0.0 libcootaneer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootaneer.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' make[4]: Leaving directory '/var/www/debian/coot/coot/cootaneer' make[3]: Leaving directory '/var/www/debian/coot/coot/cootaneer' Making install in ideal make[3]: Entering directory '/var/www/debian/coot/coot/ideal' make[4]: Entering directory '/var/www/debian/coot/coot/ideal' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ideal.la' libtool: install: (cd /var/www/debian/coot/coot/ideal; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DHAVE_GSL -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lpng16 -lm -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -lpthread -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-heavy -lcoot-map-utils -lcoot-geometry -lcoot-coord-extras -lcoot-coord-utils -lcoot-mini-mol -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ideal.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so.0 || { rm -f libcoot-ideal.so.0 && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so || { rm -f libcoot-ideal.so && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ideal.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/install -c coot-mini-rsr coot-ligand-validation '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c mini-rsr-bin coot-ligand-validation-bin '/var/www/debian/coot/coot/debian/tmp/usr/libexec' libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mini-rsr-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/mini-rsr-bin libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-ligand-validation-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/coot-ligand-validation-bin /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/ideal' /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h zo-rama.hh phi-psi.hh parallel-planes.hh torsion-bonds.hh extra-restraints.hh model-bond-deltas.hh refinement-lights.hh refinement-results-t.hh rama-types.hh new-linked-residue-t.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/ideal' make[4]: Leaving directory '/var/www/debian/coot/coot/ideal' make[3]: Leaving directory '/var/www/debian/coot/coot/ideal' Making install in ligand make[3]: Entering directory '/var/www/debian/coot/coot/ligand' make[4]: Entering directory '/var/www/debian/coot/coot/ligand' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la libcoot-res-tracer.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ligand.la' libtool: install: (cd /var/www/debian/coot/coot/ligand; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ligand.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so.0 || { rm -f libcoot-ligand.so.0 && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so || { rm -f libcoot-ligand.so && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.la libtool: warning: relinking 'libcoot-res-tracer.la' libtool: install: (cd /var/www/debian/coot/coot/ligand; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-ideal -lcoot-map-utils -lcoot-coord-utils -lcoot-mini-mol -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0 || { rm -f libcoot-res-tracer.so.0 && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so || { rm -f libcoot-res-tracer.so && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/install -c findwaters findligand coot-identify-protein '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c findligand-bin findwaters-bin coot-make-ligands-db identify-protein-bin '/var/www/debian/coot/coot/debian/tmp/usr/libexec' libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/findligand-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/findligand-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/findwaters-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/findwaters-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-make-ligands-db /var/www/debian/coot/coot/debian/tmp/usr/libexec/coot-make-ligands-db libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/identify-protein-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/identify-protein-bin /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 ligands-2016.db '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data' /usr/bin/mkdir -p /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/assign-side-chains && ${TAR-tar} -x -C /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/assign-side-chains -f ../ligand/side-chain-data.tar.gz /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/install -c -m 644 useable-grid-points-nstep=5,box_radius=5.0-charybdis.data '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/ligand' /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh trace.hh multi-peptide.hh ligands-db.hh scored-coord.hh ligand-score-card.hh scored-molecule.hh map-point-cluster.hh side-chain-densities.hh tube-finder.hh smith-waterman.hh side-chain.hh new-residue-by-3-phi-psi.hh refine-isolated-chain.hh libres-tracer.hh dSFMT.h dSFMT-params.h dSFMT-params19937.h dSFMT-common.h scored-node.hh rama-rsr-extend-fragments.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/ligand' make[4]: Leaving directory '/var/www/debian/coot/coot/ligand' make[3]: Leaving directory '/var/www/debian/coot/coot/ligand' Making install in coords make[3]: Entering directory '/var/www/debian/coot/coot/coords' make[4]: Entering directory '/var/www/debian/coot/coot/coords' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coords.la' libtool: install: (cd /var/www/debian/coot/coot/coords; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-coord-utils -lcoot-coord-extras -lcoot-geometry -lcoot-mini-mol -lcootaneer -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coords.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so.0 || { rm -f libcoot-coords.so.0 && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so || { rm -f libcoot-coords.so && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coords.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/coords' /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.hh mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh phenix-geo.hh ramachandran-container.hh loop-path.hh rotamer-container.hh graphical-bonds-container.hh graphics-line.hh torus-description.hh rama-plot-phi-psi.hh phi-psi-prob.hh ramachandran-validation.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/coords' make[4]: Leaving directory '/var/www/debian/coot/coot/coords' make[3]: Leaving directory '/var/www/debian/coot/coot/coords' Making install in density-contour make[3]: Entering directory '/var/www/debian/coot/coot/density-contour' make[4]: Entering directory '/var/www/debian/coot/coot/density-contour' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-isosurface.la' libtool: install: (cd /var/www/debian/coot/coot/density-contour; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0 || { rm -f libcoot-isosurface.so.0 && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so || { rm -f libcoot-isosurface.so && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/density-contour' /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh occlusion.hh transfer-occlusions.hh gaussian-surface.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/density-contour' make[4]: Leaving directory '/var/www/debian/coot/coot/density-contour' make[3]: Leaving directory '/var/www/debian/coot/coot/density-contour' Making install in skeleton make[3]: Entering directory '/var/www/debian/coot/coot/skeleton' make[4]: Entering directory '/var/www/debian/coot/coot/skeleton' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-skeleton.la' libtool: install: (cd /var/www/debian/coot/coot/skeleton; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lcoot-ideal -lcoot-geometry -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0 || { rm -f libcoot-skeleton.so.0 && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so || { rm -f libcoot-skeleton.so && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/skeleton' /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/skeleton' make[4]: Leaving directory '/var/www/debian/coot/coot/skeleton' make[3]: Leaving directory '/var/www/debian/coot/coot/skeleton' Making install in high-res make[3]: Entering directory '/var/www/debian/coot/coot/high-res' make[4]: Entering directory '/var/www/debian/coot/coot/high-res' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-high-res.la' libtool: install: (cd /var/www/debian/coot/coot/high-res; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DHAVE_GSL -I/usr/include -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-coords -lcoot-ligand -lcoot-map-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-high-res.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so.0 || { rm -f libcoot-high-res.so.0 && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so || { rm -f libcoot-high-res.so && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-high-res.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/high-res' /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/high-res' make[4]: Leaving directory '/var/www/debian/coot/coot/high-res' make[3]: Leaving directory '/var/www/debian/coot/coot/high-res' Making install in build make[3]: Entering directory '/var/www/debian/coot/coot/build' make[4]: Entering directory '/var/www/debian/coot/coot/build' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-cabuild.la' libtool: install: (cd /var/www/debian/coot/coot/build; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/CalphaBuild.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0 || { rm -f libcoot-cabuild.so.0 && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so || { rm -f libcoot-cabuild.so && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/build' /usr/bin/install -c -m 644 CalphaBuild.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/build' make[4]: Leaving directory '/var/www/debian/coot/coot/build' make[3]: Leaving directory '/var/www/debian/coot/coot/build' Making install in MoleculesToTriangles make[3]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles' Making install in CXXSurface make[4]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface' make[5]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXSurface.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0 || { rm -f libMoleculesToTrianglesCXXSurface.so.0 && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so || { rm -f libMoleculesToTrianglesCXXSurface.so && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include' /usr/bin/install -c -m 644 ctpl_boost.h CXXCoord.h CXXNewHood.h CXXSphereNode.h CXXTorusElement.h surface.h CXXAlloc.h CXXCreator.h CXXPointyBit.h CXXSphereTriangleEdge.h CXXTorusNode.h TokenIterator.h CXXBall.h CXXException.h CXXQADSurface.h CXXSphereTriangle.h CXXTorusTriangle.h.h CXXChargeTable.h CXXFFTSolventMap.h CXXSpace.h CXXSurface.h CXXTriangle.h CXXCircle.h CXXFortranFile.h CXXSphereElement.h CXXSurfaceMaker.h CXXUtils.h CXXCircleNode.h CXXMatrix4x4.h CXXSphereFlatTriangle.h CXXSurfaceVertex.h CXXVCN.h '/var/www/debian/coot/coot/debian/tmp/usr/include' make[5]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface' make[4]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXSurface' Making install in CXXClasses make[4]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses' make[5]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXClasses.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libMoleculesToTrianglesCXXClasses.la' libtool: install: (cd /var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -L/usr/lib/aarch64-linux-gnu -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXSurface -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0 || { rm -f libMoleculesToTrianglesCXXClasses.so.0 && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so || { rm -f libMoleculesToTrianglesCXXClasses.so && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include' /usr/bin/install -c -m 644 Quaternion.hpp Vector.hpp Vector2.hpp Vector3.hpp AtomPropertyRampColorRule.h DirectedPositionedEntity.h BallsPrimitive.h DiscreteSegment.h Representation.h BondsPrimitive.h DisplayPrimitive.h RepresentationInstance.h BoxSectionPrimitive.h GLIndexType.h RotatedTranslatedScaledEntity.h CXXMatrix.h Light.h SceneSetup.h Callbacks.h LinesPrimitive.h SecondaryColorScheme.h Camera.h MolecularRepresentation.h SolidColorRule.h MolecularRepresentationInstance.h SpherePrimitive.h ColorNamesMap.h MyMolecule.h SticksPrimitive.h ColorRule.h NRStuff.h SurfacePrimitive.h ColorScheme.h Polyhedron.h VertexColorNormalPrimitive.h CompoundSelection.h PositionedEntity.h lfit.h CylinderPoint.h Renderer.h '/var/www/debian/coot/coot/debian/tmp/usr/include' /usr/bin/install -c -m 644 oglPolyhedron.h CylindersPrimitive.h RendererGL.h RendererGLSL.hpp DishyBase.h FlatFanPrimitive.h '/var/www/debian/coot/coot/debian/tmp/usr/include' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 MoleculesToTrianglesCXXClasses.pc '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[5]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses' make[4]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles/CXXClasses' make[4]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles' make[5]: Entering directory '/var/www/debian/coot/coot/MoleculesToTriangles' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles' make[4]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles' make[3]: Leaving directory '/var/www/debian/coot/coot/MoleculesToTriangles' Making install in pli make[3]: Entering directory '/var/www/debian/coot/coot/pli' make[4]: Entering directory '/var/www/debian/coot/coot/pli' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-pli.la' libtool: install: (cd /var/www/debian/coot/coot/pli; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-geometry -lcoot-lidia-core -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-pli.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so.0 || { rm -f libcoot-pli.so.0 && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so || { rm -f libcoot-pli.so && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-pli.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/pli' /usr/bin/install -c -m 644 flev-annotations.hh protein-ligand-interactions.hh pi-stacking.hh specs.hh sdf-interface.hh sdf-internal.hh sdf-interface-for-export.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/pli' make[4]: Leaving directory '/var/www/debian/coot/coot/pli' make[3]: Leaving directory '/var/www/debian/coot/coot/pli' Making install in greg-tests make[3]: Entering directory '/var/www/debian/coot/coot/greg-tests' make[4]: Entering directory '/var/www/debian/coot/coot/greg-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/www/debian/coot/coot/greg-tests' make[3]: Leaving directory '/var/www/debian/coot/coot/greg-tests' Making install in python-tests make[3]: Entering directory '/var/www/debian/coot/coot/python-tests' make[4]: Entering directory '/var/www/debian/coot/coot/python-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/www/debian/coot/coot/python-tests' make[3]: Leaving directory '/var/www/debian/coot/coot/python-tests' Making install in cootilus make[3]: Entering directory '/var/www/debian/coot/coot/cootilus' make[4]: Entering directory '/var/www/debian/coot/coot/cootilus' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootilus.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootilus.so.0.0.0 /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so.0 || { rm -f libcootilus.so.0 && ln -s libcootilus.so.0.0.0 libcootilus.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so || { rm -f libcootilus.so && ln -s libcootilus.so.0.0.0 libcootilus.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootilus.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 nautilus_lib.pdb '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' make[4]: Leaving directory '/var/www/debian/coot/coot/cootilus' make[3]: Leaving directory '/var/www/debian/coot/coot/cootilus' Making install in pyrogen make[3]: Entering directory '/var/www/debian/coot/coot/pyrogen' make[4]: Entering directory '/var/www/debian/coot/coot/pyrogen' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/install -c pyrogen '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot_py_restraints.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /var/www/debian/coot/coot/pyrogen; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lcairo -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.11 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _pyrogen_swig.la pyrogen_boost.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /var/www/debian/coot/coot/pyrogen; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python311 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lcairo -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python311 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.11 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /var/www/debian/coot/coot/pyrogen; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python311 -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/restraints-boost.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python311 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: /usr/bin/install -c .libs/pyrogen_boost.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: /usr/bin/install -c .libs/pyrogen_boost.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[5]: Entering directory '/var/www/debian/coot/coot/pyrogen' make[5]: Nothing to be done for 'install-exec-hook'. make[5]: Leaving directory '/var/www/debian/coot/coot/pyrogen' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py make[4]: Leaving directory '/var/www/debian/coot/coot/pyrogen' make[3]: Leaving directory '/var/www/debian/coot/coot/pyrogen' Making install in data make[3]: Entering directory '/var/www/debian/coot/coot/data' Making install in rama-coeffs make[4]: Entering directory '/var/www/debian/coot/coot/data/rama-coeffs' make[5]: Entering directory '/var/www/debian/coot/coot/data/rama-coeffs' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/rama/zo-tables' /usr/bin/install -c -m 644 all-non-pre-pro.tab coeffsolution.dat '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/rama/zo-tables' make[5]: Leaving directory '/var/www/debian/coot/coot/data/rama-coeffs' make[4]: Leaving directory '/var/www/debian/coot/coot/data/rama-coeffs' Making install in cho-models make[4]: Entering directory '/var/www/debian/coot/coot/data/cho-models' make[5]: Entering directory '/var/www/debian/coot/coot/data/cho-models' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-models' /usr/bin/install -c -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-models' make[5]: Leaving directory '/var/www/debian/coot/coot/data/cho-models' make[4]: Leaving directory '/var/www/debian/coot/coot/data/cho-models' Making install in cho-acedrg make[4]: Entering directory '/var/www/debian/coot/coot/data/cho-acedrg' make[5]: Entering directory '/var/www/debian/coot/coot/data/cho-acedrg' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-acedrg' /usr/bin/install -c -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-acedrg' make[5]: Leaving directory '/var/www/debian/coot/coot/data/cho-acedrg' make[4]: Leaving directory '/var/www/debian/coot/coot/data/cho-acedrg' Making install in metal make[4]: Entering directory '/var/www/debian/coot/coot/data/metal' make[5]: Entering directory '/var/www/debian/coot/coot/data/metal' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal' /usr/bin/install -c -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal' make[5]: Leaving directory '/var/www/debian/coot/coot/data/metal' make[4]: Leaving directory '/var/www/debian/coot/coot/data/metal' make[4]: Entering directory '/var/www/debian/coot/coot/data' make[5]: Entering directory '/var/www/debian/coot/coot/data' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 syminfo.lib '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' make[5]: Leaving directory '/var/www/debian/coot/coot/data' make[4]: Leaving directory '/var/www/debian/coot/coot/data' make[3]: Leaving directory '/var/www/debian/coot/coot/data' Making install in man make[3]: Entering directory '/var/www/debian/coot/coot/man' make[4]: Entering directory '/var/www/debian/coot/coot/man' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'coot.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot.1' /usr/bin/install -c -m 644 'coot-density-score-by-residue.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-density-score-by-residue.1' /usr/bin/install -c -m 644 'coot-compare-dictionaries.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-compare-dictionaries.1' /usr/bin/install -c -m 644 'coot-available-comp-id.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-available-comp-id.1' /usr/bin/install -c -m 644 'coot-bfactan.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-bfactan.1' /usr/bin/install -c -m 644 'coot-fix-nomenclature-errors.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-fix-nomenclature-errors.1' /usr/bin/install -c -m 644 'coot-make-shelx-restraints.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-make-shelx-restraints.1' /usr/bin/install -c -m 644 'coot-mini-rsr.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/coot-mini-rsr.1' /usr/bin/install -c -m 644 'lidia.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/lidia.1' /usr/bin/install -c -m 644 'findwaters.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/findwaters.1' /usr/bin/install -c -m 644 'findligand.man' '/var/www/debian/coot/coot/debian/tmp/usr/share/man/man1/findligand.1' make[4]: Leaving directory '/var/www/debian/coot/coot/man' make[3]: Leaving directory '/var/www/debian/coot/coot/man' Making install in rama-data make[3]: Entering directory '/var/www/debian/coot/coot/rama-data' make[4]: Entering directory '/var/www/debian/coot/coot/rama-data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data' /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data' make[4]: Leaving directory '/var/www/debian/coot/coot/rama-data' make[3]: Leaving directory '/var/www/debian/coot/coot/rama-data' Making install in doc make[3]: Entering directory '/var/www/debian/coot/coot/doc' make[4]: Entering directory '/var/www/debian/coot/coot/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/www/debian/coot/coot/doc' make[3]: Leaving directory '/var/www/debian/coot/coot/doc' Making install in glTF make[3]: Entering directory '/var/www/debian/coot/coot/glTF' make[4]: Entering directory '/var/www/debian/coot/coot/glTF' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/glTF' /usr/bin/install -c -m 644 grey-eyelashes-many-lashes.glb '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/glTF' make[4]: Leaving directory '/var/www/debian/coot/coot/glTF' make[3]: Leaving directory '/var/www/debian/coot/coot/glTF' Making install in pixmaps make[3]: Entering directory '/var/www/debian/coot/coot/pixmaps' Making install in icons make[4]: Entering directory '/var/www/debian/coot/coot/pixmaps/icons' make[5]: Entering directory '/var/www/debian/coot/coot/pixmaps/icons' make[5]: Nothing to be done for 'install-exec-am'. for icon in hicolor_apps_48x48_coot.png hicolor_apps_64x64_coot.png hicolor_apps_96x96_coot.png hicolor_apps_256x256_coot.png hicolor_apps_scalable_coot.svg hicolor_apps_scalable_coot-layla.svg hicolor_actions_scalable_Stock-dialog-warning.svg hicolor_actions_scalable_Stock-dialog-information.svg; do \ THEME=` echo $icon | cut -d_ -f1`; \ CONTEXT=` echo $icon | cut -d_ -f2`; \ SIZE=` echo $icon | cut -d_ -f3`; \ ICONFILE=`echo $icon | cut -d_ -f4`; \ mkdir -p /var/www/debian/coot/coot/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT; \ /usr/bin/install -c -m 644 ./$icon /var/www/debian/coot/coot/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT/$ICONFILE; \ done; make[5]: Leaving directory '/var/www/debian/coot/coot/pixmaps/icons' make[4]: Leaving directory '/var/www/debian/coot/coot/pixmaps/icons' make[4]: Entering directory '/var/www/debian/coot/coot/pixmaps' make[5]: Entering directory '/var/www/debian/coot/coot/pixmaps' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 add-alt-conf.png dna.svg probe-clash.svg add-alt-conf.svg edit-backbone.svg radacina_handcuffs-small.svg add-peptide-1.png edit-chi.png ramachandran.png add-peptide-1.svg edit-chi.svg refine-1.svg add-water.svg emsley.jpg refine.png anchor.svg env-distances.png regularize-1.svg aniso-atom.png env-distances.svg regularize.png aniso-atom.svg eugene.jpg renumber-residues.svg appointment-new.png flip-peptide.png reset-view-32.png atom-at-pointer.png flip-peptide.svg reset-view-32.svg atom-at-pointer.svg generic-display-objects.svg reset-view.png auto-fit-rotamer.png geom.svg reset-view.svg auto-fit-rotamer.svg ghosts.png residue-info.png azerbaijan2.svg '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 ghosts.svg residue-info.svg azerbaijan.svg gln-asn-b-factors.svg rigid-body.png calculate-ghosts.svg gln-asn-b-factorssvg.svg rigid-body.svg cell+symm.png glyco-structures.svg rotamers.png cell+symm.svg gnome-run.png rotamers.svg change-chain-id.svg go-to-atom.svg rtz.png rrz.png chiral.png go-to-ligand.svg rtz.svg rrz.svg chiral.svg gtk-connect-16.png scroll-wheel.svg connect-to-ccp4.svg gtk-font.png secondary-structure.svg connect-to-oca.svg gtk-open-16.png sequence-view.png connect-to-usf.svg gtk-open-24.png sequence-view.svg connect-to-world.svg gtk-open.png side-chain-180.png kevin.jpg side-chain-180.svg kevin-orig.jpg '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 smiles.png kleywegt.svg smiles.svg map.svg spin-view.png coot-favicon.png merge-molecules.svg spin-view.svg coot-icon.png mutate-auto-fit.svg stereo-view.svg coot-save.png mutate.svg stop.svg coot-save-symm.png panel-screenshot.png temperature.png crosshairs.png peptide-omega.png temperature.svg crosshairs.svg peptide-omega.svg torsion-general.svg delete.png phenixed.svg undo-1.png delete.svg pink-pointer.png undo-1.svg density-fit.svg pink-pointer.svg unknown-blob.png diff-map.png plane-distances.png unknown-blob.svg diff-map.svg plane-distances.svg water-diff-map.svg display-manager.png pointer-distances.png '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 water-drop.svg display-manager.svg pointer-distances.svg edit-undo.png edit-redo.png edit-delete.png python-logo.svg koppi-green-tick-64.png rygle-red-cross-64.png forest51690-dwcheckno-incomplete-64.png go-to-ligand.png go-to-atom.png azerbaijan.png add-water.png mutate.png mutate-auto-fit.png edit-backbone.png torsion-general.png anchor.png regularize-1.png refine-1.png stock-zoom-follow-window-12.svg stock-zoom-follow-window-12.png rama_all.png rama_gly.png rama_pro.png rama_non_gly_pro.png curlew-long.png curlew-128-filled.svg refmac.svg broom.png broom.svg jed-flip-reverse.svg layla_3c.svg layla_4c.svg layla_5c.svg layla_6arom.svg layla_6c.svg layla_7c.svg layla_8c.svg '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 layla_charge_tool.svg layla_delete_hydrogens_tool.svg layla_double_bond.svg layla_format_tool.svg layla_geometry_tool-dark.svg layla_geometry_tool.svg layla_key.svg layla_move_tool.svg layla_single_bond.svg layla_triple_bond.svg rama2_all.png rama2_gly.png rama2_pro.png rama2_non_gly_pro.png rama2_ileval.png rama2_pre_pro.png rama2_non_gly_pro_pre_pro_ileval.png '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/pixmaps' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/images' /usr/bin/install -c -m 644 coot-1.png '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/images' make[5]: Leaving directory '/var/www/debian/coot/coot/pixmaps' make[4]: Leaving directory '/var/www/debian/coot/coot/pixmaps' make[3]: Leaving directory '/var/www/debian/coot/coot/pixmaps' Making install in textures make[3]: Entering directory '/var/www/debian/coot/coot/textures' make[4]: Entering directory '/var/www/debian/coot/coot/textures' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/textures' /usr/bin/install -c -m 644 hud-label-nbc-rama.png hud-tooltip.png happy-face-marker.png sad-face-marker.png rama-plot-pro-normal.png rama-plot-pro-outlier.png rama-plot-gly-normal.png rama-plot-gly-outlier.png rama-plot-other-normal.png rama-plot-other-outlier.png rama-standard-inverted.png hud-label-NBC-small.png hud-label-pull-small.png hud-label-chiral-small.png hud-label-rama-small.png hud-label-rota-small.png anchor-for-fixed-atoms.png refinement-dialog-arrrow-highlighted.png refinement-dialog-arrrow.png angry-diego.svg angry-diego.png chiral-volume-outlier-marker.png '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/textures' make[4]: Leaving directory '/var/www/debian/coot/coot/textures' make[3]: Leaving directory '/var/www/debian/coot/coot/textures' Making install in sounds make[3]: Entering directory '/var/www/debian/coot/coot/sounds' make[4]: Entering directory '/var/www/debian/coot/coot/sounds' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/sounds' /usr/bin/install -c -m 644 sounds.readme 325112_3246658-lq-fisch12345-success.ogg 538546_3725923-lq-Sjonas_Rising.ogg 538548_3725923-lq-Sjonas-Select-3.ogg 538549_3725923-lq-Sjonas-Select-2.ogg 538550_3725923-lq-Sjonas88-Deep-tone.ogg 538551_3725923-lq-Sjonas88-3-select.ogg 538553_3725923-lq-Sjonas88-Stars.ogg 538554_3725923-lq-Sjonas88-success.ogg cdonahueucsd-337132_5955158-lq.ogg pop-dodrio-554022_1433422-lq.ogg '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/sounds' make[4]: Leaving directory '/var/www/debian/coot/coot/sounds' make[3]: Leaving directory '/var/www/debian/coot/coot/sounds' Making install in api make[3]: Entering directory '/var/www/debian/coot/coot/api' make[4]: Entering directory '/var/www/debian/coot/coot/api' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-api.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-api.la' libtool: install: (cd /var/www/debian/coot/coot/api; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-ligand -lcoot-pli -lcoot-ideal -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-analysis -lcoot-isosurface -lcoot-map-heavy -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coords -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-api.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so.0 || { rm -f libcoot-api.so.0 && ln -s libcoot-api.so.0.0.0 libcoot-api.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so || { rm -f libcoot-api.so && ln -s libcoot-api.so.0.0.0 libcoot-api.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-api.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _coot_headless_api.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot_headless_api.la' libtool: install: (cd /var/www/debian/coot/coot/api; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot_headless_api.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so.0 || { rm -f _coot_headless_api.so.0 && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so || { rm -f _coot_headless_api.so && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot_headless_api.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot_headless_api.py '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot_headless_api.py Byte-compiling python modules (optimized versions) ... coot_headless_api.py /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/api' /usr/bin/install -c -m 644 coot-molecule.hh make-a-dodec.hh colour-functions.hh gensurf.hh validation-information.hh coot-colour.hh ghost-molecule-display.hh residue-validation-information.hh molecules-container.hh ncs.hh geometry-graphs.hh rama-plot-phi-psi.hh superpose-results.hh add-terminal-residue.hh interfaces.hh moorhen-h-bonds.hh atom-pull.hh rigid-body-fit.hh svg-store-key.hh phi-psi-prob.hh saved-strand-info.hh simple-molecule.hh generic-3d-lines.hh cell.hh coot-simple-molecule.hh api-cell.hh bond-colour.hh make-instanced-graphical-bonds.hh symmetry-info.hh instancing.hh merge-molecule-results-info-t.hh coot-molecule-bonds.hh clipper-ccp4-map-file-wrapper.hh blender-mesh.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/api' make[4]: Leaving directory '/var/www/debian/coot/coot/api' make[3]: Leaving directory '/var/www/debian/coot/coot/api' Making install in layla make[3]: Entering directory '/var/www/debian/coot/coot/layla' make[4]: Entering directory '/var/www/debian/coot/coot/layla' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-layla.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-layla.la' libtool: install: (cd /var/www/debian/coot/coot/layla; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-layla.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so.0 || { rm -f libcoot-layla.so.0 && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so || { rm -f libcoot-layla.so && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-layla.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c layla '/var/www/debian/coot/coot/debian/tmp/usr/bin' libtool: warning: 'libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/layla /var/www/debian/coot/coot/debian/tmp/usr/bin/layla /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/layla' /usr/bin/install -c -m 644 layla_embedded.hpp generators.hpp notifier.hpp ui.hpp utils.hpp state.hpp ligand_editor_canvas/core.hpp ligand_editor_canvas/model.hpp ligand_editor_canvas/tools.hpp ligand_editor_canvas/render.hpp ligand_editor_canvas.hpp python_utils.hpp '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/layla' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 layla.ui '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/var/www/debian/coot/coot/layla' make[3]: Leaving directory '/var/www/debian/coot/coot/layla' Making install in validation-graphs make[3]: Entering directory '/var/www/debian/coot/coot/validation-graphs' make[4]: Entering directory '/var/www/debian/coot/coot/validation-graphs' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-validation-graphs.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-validation-graphs.la' libtool: install: (cd /var/www/debian/coot/coot/validation-graphs; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0 || { rm -f libcoot-validation-graphs.so.0 && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so || { rm -f libcoot-validation-graphs.so && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/test-validation' /usr/bin/install -c -m 644 residue-validation-information.hh validation-information.hh validation-graphs.hh validation-graph-widget.hh sequence-view-widget.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot/test-validation' make[4]: Leaving directory '/var/www/debian/coot/coot/validation-graphs' make[3]: Leaving directory '/var/www/debian/coot/coot/validation-graphs' Making install in src make[3]: Entering directory '/var/www/debian/coot/coot/src' make install-am make[4]: Entering directory '/var/www/debian/coot/coot/src' make[5]: Entering directory '/var/www/debian/coot/coot/src' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootsumo.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcootsumo.la' libtool: install: (cd /var/www/debian/coot/coot/src; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lepoxy -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python311 -lfreetype -lsqlite3 -lpthread -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -lcoot-pli -lcoot-layla -lcoot-res-tracer -lcoot-ligand -lcoot-validation-graphs -lcoot-lidia-core -lcoot-isosurface -lcoot-cabuild -lcoot-skeleton -lcoot-AngleInfo -lcoot-db-main -lcoot-high-res -lcoot-ideal -lcoot-geometry -lcoot-coords -lccp4mg-utils -lcoot-map-heavy -lcoot-map-utils -lcoot-coord-extras -lcoot-coord-utils -lcoot-utils -lcoot-mini-mol -lcoot-analysis -lcoot-protein-db -lcootilus -lcootaneer -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-compat -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lpython3.11 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python311 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcootsumo.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so.0 || { rm -f libcootsumo.so.0 && ln -s libcootsumo.so.0.0.0 libcootsumo.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so || { rm -f libcootsumo.so && ln -s libcootsumo.so.0.0.0 libcootsumo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootsumo.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/install -c coot coot-density-score-by-residue '/var/www/debian/coot/coot/debian/tmp/usr/bin' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bin coot-density-score-by-residue-bin '/var/www/debian/coot/coot/debian/tmp/usr/libexec' libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../layla/libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/coot-bin libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ligand/libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-density-score-by-residue-bin /var/www/debian/coot/coot/debian/tmp/usr/libexec/coot-density-score-by-residue-bin /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _coot.la '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot.la' libtool: install: (cd /var/www/debian/coot/coot/src; /bin/bash "/var/www/debian/coot/coot/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.11 -DHAVE_GSL -fopenmp -g -O2 -ffile-prefix-map=/var/www/debian/coot/coot=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.11 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo -inst-prefix-dir /var/www/debian/coot/coot/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -L/var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcootsumo -lcoot-coord-utils -lcoot-coords -lcoot-geometry -lcoot-pli -lcoot-lidia-core -lcoot-utils -lpython3.11 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot.so.0.0.0T /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/_coot.so.0.0.0 libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so.0 || { rm -f _coot.so.0 && ln -s _coot.so.0.0.0 _coot.so.0; }; }) libtool: install: (cd /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so || { rm -f _coot.so && ln -s _coot.so.0.0.0 _coot.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot.lai /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/_coot.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[6]: Entering directory '/var/www/debian/coot/coot/src' make[6]: Nothing to be done for 'install-exec-hook'. make[6]: Leaving directory '/var/www/debian/coot/coot/src' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 atom-label.shader blur.shader central-cube.shader hud-text.shader hud-bars.shader hud-labels.shader map.shader model.shader screen.shader moleculestotriangles.shader instanced-objects.shader particles.shader lines.shader draw-map-cap.shader lines-pulse.shader rama-balls.shader hud-geometry-tooltip-text.shader residue-markers.shader extra-distance-restraints.shader residue-markers-for-ssao.shader model-as-mesh.shader ligand-view.shader symmetry-atoms-lines.shader rama-plot-phi-psi-markers.shader rama-plot-axes-and-ticks.shader hud-image-texture.shader hud-lines.shader depth-of-field.shader blur-x.shader blur-y.shader texture-meshes.shader camera-facing-quad-shader-for-testing.shader outline-of-active-residue.shader meshes.shader meshes-for-shadow-map.shader instanced-meshes-for-shadow-map.shader meshes-with-shadows.shader instanced-meshes-with-shadows.shader meshes-for-ssao.shader effects.shader '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 9.ssao_blur.shader 9.ssao_geometry.shader 9.ssao.shader instanced-meshes-for-ssao.shader texture-meshes-for-ssao.shader texture-meshes-with-shadows.shader texture-meshes-shadow-map.shader shadow-map-image-texture.shader rotation-centre-cross-hairs-for-ssao.shader background-image.shader '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/shaders' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/glade' /usr/bin/install -c -m 644 geometry_graphs_builder.glade '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/glade' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot.py coot.pth '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot.py Byte-compiling python modules (optimized versions) ... coot.py /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c coot.py coot.pth '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/include/coot' /usr/bin/install -c -m 644 crunch-model.hh '/var/www/debian/coot/coot/debian/tmp/usr/include/coot' make[5]: Leaving directory '/var/www/debian/coot/coot/src' make[4]: Leaving directory '/var/www/debian/coot/coot/src' make[3]: Leaving directory '/var/www/debian/coot/coot/src' Making install in ui make[3]: Entering directory '/var/www/debian/coot/coot/ui' make[4]: Entering directory '/var/www/debian/coot/coot/ui' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 coot-gtk4.ui restraints-editor.ui preferences-gtk4.ui single-map-properties-dialog-gtk4.ui '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/var/www/debian/coot/coot/ui' make[3]: Leaving directory '/var/www/debian/coot/coot/ui' make[3]: Entering directory '/var/www/debian/coot/coot' make[4]: Entering directory '/var/www/debian/coot/coot' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/appdata' /usr/bin/install -c -m 644 coot.appdata.xml '/var/www/debian/coot/coot/debian/tmp/usr/share/appdata' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/applications' /usr/bin/install -c -m 644 coot.desktop '/var/www/debian/coot/coot/debian/tmp/usr/share/applications' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 standard-residues.pdb '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' make[4]: Leaving directory '/var/www/debian/coot/coot' make[3]: Leaving directory '/var/www/debian/coot/coot' make[2]: Leaving directory '/var/www/debian/coot/coot' dh_auto_install --buildsystem cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/var/www/debian/coot/coot/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' /usr/bin/cmake -S/var/www/debian/coot/coot -B/var/www/debian/coot/coot/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so.1.1 -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/standard-residues.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/syminfo.lib -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/XYP-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/theor-helix-70.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/GLC-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-3.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-4.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/BMA-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/Makefile.in -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-6.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/Makefile -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-3.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/GAL-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-NAG-core-NAG-SER.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-6.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/NAG-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-BETA1-4.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-6.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA2-3.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/Makefile.am -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-3.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/SIA-pyranose-via-ALPHA2-3.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/MAN-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-2.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/FUL-decorations.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/ASN-NAG-via-NAG-ASN.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-XYP-BMA.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-6.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-NAG-ASN.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-2.pdb -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-2.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-2.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-3.tab -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/pdb-templates/FUC-decorations.tab -- Up-to-date: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rama500-gly-sym.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-ser.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/Makefile.in -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/Makefile -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rama500-pro.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-trp.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-ile.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-gln.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-thr.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/Makefile.am -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-glu.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-arg.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rama500-general.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-cys.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-phetyr.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-his.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-pro.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rama500-prepro.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-lys.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-met.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-asp.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-val.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-leu.data -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data/rota500-asn.data -- Up-to-date: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal/metal-S-distance.table -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal/Makefile.in -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal/Makefile -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal/Makefile.am -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal/metal-O-distance.table -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal/metal-N-distance.table -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-311-aarch64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-311-aarch64-linux-gnu.so" to "" -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/lib/libcootapi.so.1.1 -- Installing: /var/www/debian/coot/coot/debian/tmp/usr/lib/libcootapi.so make[2]: Leaving directory '/var/www/debian/coot/coot/obj-aarch64-linux-gnu' dh_auto_install --sourcedirectory=data cd data && make -j8 install DESTDIR=/var/www/debian/coot/coot/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/var/www/debian/coot/coot/data' Making install in rama-coeffs make[3]: Entering directory '/var/www/debian/coot/coot/data/rama-coeffs' make[4]: Entering directory '/var/www/debian/coot/coot/data/rama-coeffs' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/rama/zo-tables' install --strip-program=true -m 644 all-non-pre-pro.tab coeffsolution.dat '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/rama/zo-tables' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/var/www/debian/coot/coot/data/rama-coeffs' make[3]: Leaving directory '/var/www/debian/coot/coot/data/rama-coeffs' Making install in cho-models make[3]: Entering directory '/var/www/debian/coot/coot/data/cho-models' make[4]: Entering directory '/var/www/debian/coot/coot/data/cho-models' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-models' install --strip-program=true -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-models' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/var/www/debian/coot/coot/data/cho-models' make[3]: Leaving directory '/var/www/debian/coot/coot/data/cho-models' Making install in cho-acedrg make[3]: Entering directory '/var/www/debian/coot/coot/data/cho-acedrg' make[4]: Entering directory '/var/www/debian/coot/coot/data/cho-acedrg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-acedrg' install --strip-program=true -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/cho-acedrg' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/var/www/debian/coot/coot/data/cho-acedrg' make[3]: Leaving directory '/var/www/debian/coot/coot/data/cho-acedrg' Making install in metal make[3]: Entering directory '/var/www/debian/coot/coot/data/metal' make[4]: Entering directory '/var/www/debian/coot/coot/data/metal' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal' install --strip-program=true -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data/metal' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/var/www/debian/coot/coot/data/metal' make[3]: Leaving directory '/var/www/debian/coot/coot/data/metal' make[3]: Entering directory '/var/www/debian/coot/coot/data' make[4]: Entering directory '/var/www/debian/coot/coot/data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data' /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' install --strip-program=true -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/data' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 syminfo.lib '/var/www/debian/coot/coot/debian/tmp/usr/share/coot' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/var/www/debian/coot/coot/data' make[3]: Leaving directory '/var/www/debian/coot/coot/data' make[2]: Leaving directory '/var/www/debian/coot/coot/data' dh_auto_install --sourcedirectory=rama-data cd rama-data && make -j8 install DESTDIR=/var/www/debian/coot/coot/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/var/www/debian/coot/coot/rama-data' make[3]: Entering directory '/var/www/debian/coot/coot/rama-data' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data' install --strip-program=true -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/var/www/debian/coot/coot/debian/tmp/usr/share/coot/rama-data' install: WARNING: ignoring --strip-program option as -s option was not specified make[3]: Leaving directory '/var/www/debian/coot/coot/rama-data' make[2]: Leaving directory '/var/www/debian/coot/coot/rama-data' dh_auto_install --sourcedirectory=python cd python && make -j8 install DESTDIR=/var/www/debian/coot/coot/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/var/www/debian/coot/coot/python' make[3]: Entering directory '/var/www/debian/coot/coot/python' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' install --strip-program=true -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/var/www/debian/coot/coot/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[3]: Leaving directory '/var/www/debian/coot/coot/python' make[2]: Leaving directory '/var/www/debian/coot/coot/python' # Drop the remaining *.la and PTH files find debian/tmp -name '*.la' | xargs --no-run-if-empty rm find debian/tmp -name coot.pth | xargs --no-run-if-empty rm # Overwrite the LD_LIBRARY_PATH setting sed -i 's/LD_LIBRARY_PATH=$COOT_PREFIX\/lib/LD_LIBRARY_PATH=$COOT_PREFIX\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/* # decode image and convert to smaller sizes # TODO: let us reuse pixmaps/coot-icon.png uudecode < debian/coot-button-64x64.png.uu for g in 22x22 24x24 32x32 48x48; do \ convert -geometry $g coot-button-64x64.png coot-button-$g.png;\ done # install the newly generated png's in the hicolor theme for g in 22x22 24x24 32x32 48x48 64x64; do \ install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\ done make[1]: Leaving directory '/var/www/debian/coot/coot' debian/rules override_dh_install make[1]: Entering directory '/var/www/debian/coot/coot' dh_install -a dh_install -i --exclude=scheme rm debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootapi.so* make[1]: Leaving directory '/var/www/debian/coot/coot' debian/rules override_dh_installdocs make[1]: Entering directory '/var/www/debian/coot/coot' dh_installdocs RELEASE-NOTES # debian/citation.bib -- not available (?) make[1]: Leaving directory '/var/www/debian/coot/coot' dh_installchangelogs dh_installman dh_python3 I: dh_python3 fs:401: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so I: dh_python3 fs:403: renaming debian/coot/usr/lib/python3/dist-packages/_coot.so.0.0.0 to _coot.so I: dh_python3 fs:418: renaming _coot.so to _coot.cpython-311-aarch64-linux-gnu.so I: dh_python3 fs:297: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so.0 I: dh_python3 fs:401: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so I: dh_python3 fs:403: renaming debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 to _coot_headless_api.so I: dh_python3 fs:418: renaming _coot_headless_api.so to _coot_headless_api.cpython-311-aarch64-linux-gnu.so I: dh_python3 fs:297: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0 I: dh_python3 fs:401: removing symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so I: dh_python3 fs:403: renaming debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 to _pyrogen_swig.so I: dh_python3 fs:418: renaming _pyrogen_swig.so to _pyrogen_swig.cpython-311-aarch64-linux-gnu.so I: dh_python3 fs:297: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0 I: dh_python3 fs:401: removing symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so I: dh_python3 fs:403: renaming debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 to pyrogen_boost.so I: dh_python3 fs:418: renaming pyrogen_boost.so to pyrogen_boost.cpython-311-aarch64-linux-gnu.so I: dh_python3 fs:297: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0 dh_icons dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/var/www/debian/coot/coot' dh_shlibdeps -l/usr/lib/aarch64-linux-gnu/coot dpkg-shlibdeps: warning: symbol rfftwnd_destroy_plan used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol rfftwnd_one_complex_to_real used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol rfftwnd_one_real_to_complex used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol rfftw3d_create_plan used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util13int_to_stringB5cxx11Ei used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-pli.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_destroy used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_get_reference_count used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.cpython-311-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.cpython-311-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyModule_Create2: it's probably a plugin dpkg-shlibdeps: warning: 93 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _ZN4coot4util13calc_atom_mapEPN4mmdb7ManagerEiRKN7clipper4CellERKNS4_10SpacegroupERKNS4_13Grid_samplingE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util16density_at_pointERKN7clipper4XmapIfEERKNS1_10Coord_orthE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util16sharpen_blur_mapEPN7clipper4XmapIfEEf used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util7extentsEPN4mmdb7ManagerEi used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 was not linked against libblas.so.3 (it uses none of the library's symbols) make[1]: Leaving directory '/var/www/debian/coot/coot' dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcootapi-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'coot-doc' in '../coot-doc_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb'. dpkg-deb: building package 'libcootapi-dev' in '../libcootapi-dev_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.deb'. dpkg-deb: building package 'libcootapi1.1-dbgsym' in '../libcootapi1.1-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.deb'. dpkg-deb: building package 'coot-dbgsym' in '../coot-dbgsym_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.deb'. dpkg-deb: building package 'coot' in '../coot_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.deb'. dpkg-deb: building package 'coot-data' in '../coot-data_1.1.07.705.gb7e2c16a2+dfsg-1_all.deb'. dpkg-deb: building package 'libcootapi1.1' in '../libcootapi1.1_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.deb'. dpkg-genbuildinfo -O../coot_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.buildinfo dpkg-genchanges -O../coot_1.1.07.705.gb7e2c16a2+dfsg-1_arm64.changes dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-source: info: unapplying no-RPATH.patch dpkg-source: info: unapplying no-libdwarf.patch dpkg-source: info: unapplying system-fonts.patch dpkg-source: info: unapplying drop-nonexistent-RDKit-libraries.patch dpkg-buildpackage: info: full upload (original source is included) Now signing changes and any dsc files... signfile dsc coot_1.1.07.705.gb7e2c16a2+dfsg-1.dsc Andrius Merkys gpg: skipped "Andrius Merkys ": No secret key gpg: /tmp/debsign.L4IwL1tW/coot_1.1.07.705.gb7e2c16a2+dfsg-1.dsc: clear-sign failed: No secret key debsign: gpg error occurred! Aborting....