/* * Copyright (C) by Argonne National Laboratory * See COPYRIGHT in top-level directory */ /* Wei-keng Liao (wkliao@ece.northwestern.edu) September 8, 2008 */ #include #include #include #include static void handle_error(int errcode, const char *str) { char msg[MPI_MAX_ERROR_STRING]; int resultlen; MPI_Error_string(errcode, msg, &resultlen); fprintf(stderr, "%s: %s\n", str, msg); MPI_Abort(MPI_COMM_WORLD, 1); } #define MPI_CHECK(fn) { int errcode; errcode = (fn); if (errcode != MPI_SUCCESS) handle_error(errcode, #fn); } #define YLEN 5 #define XLEN 10 #define SUB_XLEN 3 /* rjl: I was just too lazy to compute this at run-time */ char compare_buf[XLEN * 4][YLEN * 4] = { {'0', '1', '2', 0, 0, '3', '4', '5', 0, 0, 'D', 'E', 'F', 0, 0, 'G', 'H', 'I'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'6', '7', '8', 0, 0, '9', ':', ';', 0, 0, 'J', 'K', 'L', 0, 0, 'M', 'N', 'O'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'X', 'Y', 'Z', 0, 0, '[', '\\', ']', 0, 0, 'l', 'm', 'n', 0, 0, 'o', 'p', 'q'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'^', '_', '`', 0, 0, 'a', 'b', 'c', 0, 0, 'r', 's', 't', 0, 0, 'u', 'v', 'w'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'0', '1', '2', 0, 0, '3', '4', '5', 0, 0, 'D', 'E', 'F', 0, 0, 'G', 'H', 'I'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'6', '7', '8', 0, 0, '9', ':', ';', 0, 0, 'J', 'K', 'L', 0, 0, 'M', 'N', 'O'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'X', 'Y', 'Z', 0, 0, '[', '\\', ']', 0, 0, 'l', 'm', 'n', 0, 0, 'o', 'p', 'q'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {'^', '_', '`', 0, 0, 'a', 'b', 'c', 0, 0, 'r', 's', 't', 0, 0, 'u', 'v', 'w'}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}, {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0} }; /* set this if you want a dump of the global array #define VERBOSE 1 */ /*----< main() >------------------------------------------------------------*/ int main(int argc, char **argv) { int i, j, err, rank, np, num_io; char *buf, *filename; int rank_dim[2], array_of_sizes[2]; int array_of_subsizes[2]; int count, *blocklengths, global_array_size; MPI_Count ftype_size; MPI_Aint *displacements; MPI_File fh; MPI_Datatype ftype; MPI_Status status; MPI_Offset offset = 0; int nr_errors = 0; #ifdef VERBOSE int k; #endif MPI_Init(&argc, &argv); MPI_Comm_rank(MPI_COMM_WORLD, &rank); MPI_Comm_size(MPI_COMM_WORLD, &np); if (np != 4) { if (!rank) printf("Please run with 4 processes. Exiting ...\n\n"); MPI_Finalize(); return 1; } filename = argv[1]; num_io = 2; /*-----------------------------------------------------------------------*/ /* process rank in each dimension */ rank_dim[0] = rank / 2; rank_dim[1] = rank % 2; /* global 2D array size */ array_of_sizes[0] = YLEN * 2; array_of_sizes[1] = XLEN * 2; global_array_size = array_of_sizes[0] * array_of_sizes[1]; array_of_subsizes[0] = YLEN / 2; array_of_subsizes[1] = XLEN * SUB_XLEN / 5; offset = rank_dim[0] * YLEN * array_of_sizes[1] + rank_dim[1] * XLEN; /* define data type for file view */ count = array_of_subsizes[0] * 2; /* 2 is the no. blocks along X */ blocklengths = (int *) malloc(count * sizeof(int)); displacements = (MPI_Aint *) malloc(count * sizeof(MPI_Aint)); for (i = 0; i < count; i++) blocklengths[i] = array_of_subsizes[1] / 2; for (i = 0; i < array_of_subsizes[0]; i++) for (j = 0; j < 2; j++) displacements[i * 2 + j] = offset + i * 2 * array_of_sizes[1] + j * XLEN / 2; MPI_Type_create_hindexed(count, blocklengths, displacements, MPI_CHAR, &ftype); MPI_Type_commit(&ftype); MPI_Type_size_x(ftype, &ftype_size); /* subarray's layout in the global array P0's 's layout P1's layout [ 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9] | [ 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9] [ 0] 0 1 2 3 4 5 | D E F G H I [ 1] | [ 2] 6 7 8 9 : ; | J K L M N O [ 3] | [ 4] | [ 5] | [ 6] | [ 7] | [ 8] | [ 9] | P2's 's layout P3's layout [ 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9] | [ 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9] [ 0] | [ 1] | [ 2] | [ 3] | [ 4] | [ 5] X Y Z [ \ ] | l m n o p q [ 6] | [ 7] ^ _ ` a b c | r s t u v w [ 8] | [ 9] | */ /* initialize the write buffer */ buf = (char *) malloc(array_of_subsizes[0] * array_of_subsizes[1]); for (i = 0; i < array_of_subsizes[0] * array_of_subsizes[1]; i++) buf[i] = '0' + rank * 20 + i % 79; /* zero file contents --------------------------------------------------- */ if (rank == 0) { char *wr_buf = (char *) calloc(num_io * global_array_size, 1); MPI_CHECK(MPI_File_open(MPI_COMM_SELF, filename, MPI_MODE_CREATE | MPI_MODE_WRONLY, MPI_INFO_NULL, &fh)); MPI_CHECK(MPI_File_write(fh, wr_buf, num_io * global_array_size, MPI_CHAR, &status)); MPI_CHECK(MPI_File_close(&fh)); free(wr_buf); } /* open the file -------------------------------------------------------- */ err = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_CREATE | MPI_MODE_WRONLY, MPI_INFO_NULL, &fh); if (err != MPI_SUCCESS) { printf("Error: MPI_File_open() filename %s\n", filename); MPI_Abort(MPI_COMM_WORLD, -1); exit(1); } /* MPI collective write */ for (i = 0; i < num_io; i++) { offset = i * global_array_size; /* set the file view */ MPI_CHECK(MPI_File_set_view(fh, offset, MPI_BYTE, ftype, "native", MPI_INFO_NULL)); MPI_CHECK(MPI_File_write_all(fh, buf, ftype_size, MPI_CHAR, &status)); } MPI_CHECK(MPI_File_close(&fh)); /* read and print file contents ----------------------------------------- */ if (rank == 0) { char *ptr; char *rd_buf = (char *) calloc(num_io * global_array_size, 1); MPI_CHECK(MPI_File_open(MPI_COMM_SELF, filename, MPI_MODE_RDONLY, MPI_INFO_NULL, &fh)); MPI_CHECK(MPI_File_read(fh, rd_buf, num_io * global_array_size, MPI_CHAR, &status)); MPI_CHECK(MPI_File_close(&fh)); #ifdef VERBOSE printf("-------------------------------------------------------\n"); printf(" ["); for (i = 0; i < 2; i++) { for (j = 0; j < XLEN; j++) printf(" %d", j); printf(" "); } printf("]\n\n"); ptr = rd_buf; for (k = 0; k < num_io; k++) { for (i = 0; i < 2 * YLEN; i++) { printf("[%2d]", k * 2 * YLEN + i); for (j = 0; j < 2 * XLEN; j++) { if (j > 0 && j % XLEN == 0) printf(" "); if (*ptr != 0) printf(" %c", *ptr); else printf(" "); ptr++; } printf("\n"); } printf("\n"); } #endif ptr = rd_buf; for (i = 0; i < 2 * YLEN * num_io; i++) { for (j = 0; j < 2 * XLEN; j++) { if (*ptr != compare_buf[i][j]) { fprintf(stderr, "expected %c got %c at [%d][%d]\n", *ptr, compare_buf[i][j], i, j); nr_errors++; } ptr++; } } free(rd_buf); if (nr_errors == 0) fprintf(stdout, " No Errors\n"); else fprintf(stderr, "Found %d errors\n", nr_errors); } free(blocklengths); free(displacements); free(buf); MPI_Type_free(&ftype); MPI_Finalize(); return 0; } /* command-line outputs are: (the global array is written twice) % mpiexec -n 4 wkl_subarray ------------------------------------------------------- [ 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 ] [ 0] 0 1 2 3 4 5 D E F G H I [ 1] [ 2] 6 7 8 9 : ; J K L M N O [ 3] [ 4] [ 5] X Y Z [ \ ] l m n o p q [ 6] [ 7] ^ _ ` a b c r s t u v w [ 8] [ 9] [10] 0 1 2 3 4 5 D E F G H I [11] [12] 6 7 8 9 : ; J K L M N O [13] [14] [15] X Y Z [ \ ] l m n o p q [16] [17] ^ _ ` a b c r s t u v w [18] [19] */